Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0961 AAACGATCCCATGCTTTACCTTCACGTATGCATAAAATAGACCAAGGGATGGATACTAATGAGTTATTTCTTCAGTGGGAAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGATAAAAAGAAGTACTTTCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGTTATGATGTTACTTGCAAATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATTTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCTAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACAAACCAATCGATGCTCTTCCGCTCTTTGACTTCTCCATCCACCACCAACTTTGACTACCATAGTTTGTCCTTGGCCTTTTGTCGCCACCCTCGGCGCCTCTTCAAGGTGGTCCCTTCATCCTCTGAGCTCTGTCCTCTGTCAACCATCCTCGGCCTTCTGCTCACCCTCGGCCGCCACTTCATTTCGAATTTCAGCCAATCAAAATCATTAAAATTCCGGGATCAAATATGTCTTGTGAAAGGAGATTCAGATGGAGATTCACCTCCTAAAGACAATATTTTTTATTACGATTTTGATGGAGATTTAGATGTTAGTTCAAGTAGCAGGGATATTATAGGTTCTCTAGCACAAGATGCTCTTGTTGAGGAGATCAAGGGGTTTACTTTGCAGATAGTTTTGATACTTTACGTACTGCTTTCTCCTAAATTTTCTGGCCCTTCATCGTCTTCTTCACCAATCATTGACTGTGATGCAGAAACAATGCTTATTGGTTGTGTTCTCGTTTCCTTTGCTAGTTGTCCTTCATTGTTTTATCTTTCTAGGCAAAAAGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCACTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 1884 42.14 KRSHALPSRMHKIDQGMDTNELFLQWEGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCKCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSMLFRSLTSPSTTNFDYHSLSLAFCRHPRRLFKVVPSSSELCPLSTILGLLLTLGRHFISNFSQSKSLKFRDQICLVKGDSDGDSPPKDNIFYYDFDGDLDVSSSSRDIIGSLAQDALVEEIKGFTLQIVLILYVLLSPKFSGPSSSSSPIIDCDAETMLIGCVLVSFASCPSLFYLSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10444913 10485471 + ClG42_11g0096100.10 Clacu11g0961 261838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0961 627 SUPERFAMILY RING/U-box 26 78 - -
Clacu11g0961 627 ProSiteProfiles Zinc finger RanBP2 type profile. 600 627 IPR001876 -
Clacu11g0961 627 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 246 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Clacu11g0961 627 ProSiteProfiles TRIAD supradomain profile. 1 209 IPR044066 -
Clacu11g0961 627 Gene3D - 421 559 - -
Clacu11g0961 627 Gene3D - 127 254 - -
Clacu11g0961 627 SUPERFAMILY Ran binding protein zinc finger-like 600 627 IPR036443 -
Clacu11g0961 627 Gene3D - 599 627 - -
Clacu11g0961 627 SUPERFAMILY RING/U-box 150 198 - -
Clacu11g0961 627 SMART zf_4 602 626 IPR001876 -
Clacu11g0961 627 CDD Rcat_RBR_ARI7-like 154 208 - -
Clacu11g0961 627 Pfam IBR domain 153 193 - -
Clacu11g0961 627 Pfam IBR domain, a half RING-finger domain 69 131 IPR002867 GO:0008270(InterPro)
Clacu11g0961 627 SUPERFAMILY RING/U-box 70 138 - -
Clacu11g0961 627 ProSitePatterns Zinc finger RanBP2-type signature. 604 623 IPR001876 -
Clacu11g0961 627 SMART ibrneu5 135 205 IPR002867 GO:0008270(InterPro)
Clacu11g0961 627 SMART ibrneu5 69 131 IPR002867 GO:0008270(InterPro)
Clacu11g0961 627 MobiDBLite consensus disorder prediction 571 596 - -
Clacu11g0961 627 CDD BRcat_RBR_ANKIB1 76 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0604 Clacu-Chr8:13457646 Clacu11g0961 Clacu-Chr11:10444913 5.50E-188 dispersed
Clacu09g1833 Clacu-Chr9:33057634 Clacu11g0961 Clacu-Chr11:10444913 7.00E-34 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0961 K11968 - csv:101218052 489.96