Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g0961 | AAACGATCCCATGCTTTACCTTCACGTATGCATAAAATAGACCAAGGGATGGATACTAATGAGTTATTTCTTCAGTGGGAAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGATAAAAAGAAGTACTTTCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGTTATGATGTTACTTGCAAATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATTTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCTAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACAAACCAATCGATGCTCTTCCGCTCTTTGACTTCTCCATCCACCACCAACTTTGACTACCATAGTTTGTCCTTGGCCTTTTGTCGCCACCCTCGGCGCCTCTTCAAGGTGGTCCCTTCATCCTCTGAGCTCTGTCCTCTGTCAACCATCCTCGGCCTTCTGCTCACCCTCGGCCGCCACTTCATTTCGAATTTCAGCCAATCAAAATCATTAAAATTCCGGGATCAAATATGTCTTGTGAAAGGAGATTCAGATGGAGATTCACCTCCTAAAGACAATATTTTTTATTACGATTTTGATGGAGATTTAGATGTTAGTTCAAGTAGCAGGGATATTATAGGTTCTCTAGCACAAGATGCTCTTGTTGAGGAGATCAAGGGGTTTACTTTGCAGATAGTTTTGATACTTTACGTACTGCTTTCTCCTAAATTTTCTGGCCCTTCATCGTCTTCTTCACCAATCATTGACTGTGATGCAGAAACAATGCTTATTGGTTGTGTTCTCGTTTCCTTTGCTAGTTGTCCTTCATTGTTTTATCTTTCTAGGCAAAAAGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCACTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA | 1884 | 42.14 | KRSHALPSRMHKIDQGMDTNELFLQWEGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCKCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSMLFRSLTSPSTTNFDYHSLSLAFCRHPRRLFKVVPSSSELCPLSTILGLLLTLGRHFISNFSQSKSLKFRDQICLVKGDSDGDSPPKDNIFYYDFDGDLDVSSSSRDIIGSLAQDALVEEIKGFTLQIVLILYVLLSPKFSGPSSSSSPIIDCDAETMLIGCVLVSFASCPSLFYLSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR | 627 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10444913 | 10485471 | + | ClG42_11g0096100.10 | Clacu11g0961 | 261838 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g0961 | 627 | SUPERFAMILY | RING/U-box | 26 | 78 | - | - | |
Clacu11g0961 | 627 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 600 | 627 | IPR001876 | - | |
Clacu11g0961 | 627 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 26 | 246 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Clacu11g0961 | 627 | ProSiteProfiles | TRIAD supradomain profile. | 1 | 209 | IPR044066 | - | |
Clacu11g0961 | 627 | Gene3D | - | 421 | 559 | - | - | |
Clacu11g0961 | 627 | Gene3D | - | 127 | 254 | - | - | |
Clacu11g0961 | 627 | SUPERFAMILY | Ran binding protein zinc finger-like | 600 | 627 | IPR036443 | - | |
Clacu11g0961 | 627 | Gene3D | - | 599 | 627 | - | - | |
Clacu11g0961 | 627 | SUPERFAMILY | RING/U-box | 150 | 198 | - | - | |
Clacu11g0961 | 627 | SMART | zf_4 | 602 | 626 | IPR001876 | - | |
Clacu11g0961 | 627 | CDD | Rcat_RBR_ARI7-like | 154 | 208 | - | - | |
Clacu11g0961 | 627 | Pfam | IBR domain | 153 | 193 | - | - | |
Clacu11g0961 | 627 | Pfam | IBR domain, a half RING-finger domain | 69 | 131 | IPR002867 | GO:0008270(InterPro) | |
Clacu11g0961 | 627 | SUPERFAMILY | RING/U-box | 70 | 138 | - | - | |
Clacu11g0961 | 627 | ProSitePatterns | Zinc finger RanBP2-type signature. | 604 | 623 | IPR001876 | - | |
Clacu11g0961 | 627 | SMART | ibrneu5 | 135 | 205 | IPR002867 | GO:0008270(InterPro) | |
Clacu11g0961 | 627 | SMART | ibrneu5 | 69 | 131 | IPR002867 | GO:0008270(InterPro) | |
Clacu11g0961 | 627 | MobiDBLite | consensus disorder prediction | 571 | 596 | - | - | |
Clacu11g0961 | 627 | CDD | BRcat_RBR_ANKIB1 | 76 | 140 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu08g0604 | Clacu-Chr8:13457646 | Clacu11g0961 | Clacu-Chr11:10444913 | 5.50E-188 | dispersed | |
Clacu09g1833 | Clacu-Chr9:33057634 | Clacu11g0961 | Clacu-Chr11:10444913 | 7.00E-34 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g0961 | K11968 | - | csv:101218052 | 489.96 |