Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0961 AAACGATCCCATGCTTTACCTTCACGTATGCATAAAATAGACCAAGGGATGGATACTAATGAGTTATTTCTTCAGTGGGAAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGATGATAAAAAGAAGTACTTTCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGTTATGATGTTACTTGCAAATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATTTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCTAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACAAACCAATCGATGCTCTTCCGCTCTTTGACTTCTCCATCCACCACCAACTTTGACTACCATAGTTTGTCCTTGGCCTTTTGTCGCCACCCTCGGCGCCTCTTCAAGGTGGTCCCTTCATCCTCTGAGCTCTGTCCTCTGTCAACCATCCTCGGCCTTCTGCTCACCCTCGGCCGCCACTTCATTTCGAATTTCAGCCAATCAAAATCATTAAAATTCCGGGATCAAATATGTCTTGTGAAAGGAGATTCAGATGGAGATTCACCTCCTAAAGACAATATTTTTTATTACGATTTTGATGGAGATTTAGATGTTAGTTCAAGTAGCAGGGATATTATAGGTTCTCTAGCACAAGATGCTCTTGTTGAGGAGATCAAGGGGTTTACTTTGCAGATAGTTTTGATACTTTACGTACTGCTTTCTCCTAAATTTTCTGGCCCTTCATCGTCTTCTTCACCAATCATTGACTGTGATGCAGAAACAATGCTTATTGGTTGTGTTCTCGTTTCCTTTGCTAGTTGTCCTTCATTGTTTTATCTTTCTAGGCAAAAAGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCACTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 1884 42.14 KRSHALPSRMHKIDQGMDTNELFLQWEGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCKCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSMLFRSLTSPSTTNFDYHSLSLAFCRHPRRLFKVVPSSSELCPLSTILGLLLTLGRHFISNFSQSKSLKFRDQICLVKGDSDGDSPPKDNIFYYDFDGDLDVSSSSRDIIGSLAQDALVEEIKGFTLQIVLILYVLLSPKFSGPSSSSSPIIDCDAETMLIGCVLVSFASCPSLFYLSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10444913 10485471 + ClG42_11g0096100.10 Clacu11g0961 261838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0961 627 SUPERFAMILY RING/U-box 26 78 - -
Clacu11g0961 627 ProSiteProfiles Zinc finger RanBP2 type profile. 600 627 IPR001876 -
Clacu11g0961 627 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 246 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Clacu11g0961 627 ProSiteProfiles TRIAD supradomain profile. 1 209 IPR044066 -
Clacu11g0961 627 Gene3D - 421 559 - -
Clacu11g0961 627 Gene3D - 127 254 - -
Clacu11g0961 627 SUPERFAMILY Ran binding protein zinc finger-like 600 627 IPR036443 -
Clacu11g0961 627 Gene3D - 599 627 - -
Clacu11g0961 627 SUPERFAMILY RING/U-box 150 198 - -
Clacu11g0961 627 SMART zf_4 602 626 IPR001876 -
Clacu11g0961 627 CDD Rcat_RBR_ARI7-like 154 208 - -
Clacu11g0961 627 Pfam IBR domain 153 193 - -
Clacu11g0961 627 Pfam IBR domain, a half RING-finger domain 69 131 IPR002867 GO:0008270(InterPro)
Clacu11g0961 627 SUPERFAMILY RING/U-box 70 138 - -
Clacu11g0961 627 ProSitePatterns Zinc finger RanBP2-type signature. 604 623 IPR001876 -
Clacu11g0961 627 SMART ibrneu5 135 205 IPR002867 GO:0008270(InterPro)
Clacu11g0961 627 SMART ibrneu5 69 131 IPR002867 GO:0008270(InterPro)
Clacu11g0961 627 MobiDBLite consensus disorder prediction 571 596 - -
Clacu11g0961 627 CDD BRcat_RBR_ANKIB1 76 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0961 K11968 - - csv:101218052 489.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0604 Clacu-Chr8:13457646 Clacu11g0961 Clacu-Chr11:10444913 5.50E-188 dispersed
Clacu09g1833 Clacu-Chr9:33057634 Clacu11g0961 Clacu-Chr11:10444913 7.00E-34 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g1833 . 164 589 ARIADNE family AT4G34370 72.4 7.9e-184 640.2
Clacu09g1833 . 58 542 ARIADNE family AT2G16090 77.4 3.6e-225 777.7
Clacu09g1833 . 38 543 ARIADNE family AT3G27710 62.0 4.4e-184 641.3
Clacu09g1833 . 44 522 ARIADNE family AT3G27720 54.5 5.4e-144 508.1
Clacu08g0604 . 61 529 ARIADNE family AT1G05890 74.2 6.7e-218 753.8
Clacu11g0961 . 26 575 ARIADNE family AT1G05890 52.0 3.5e-158 555.4
Clacu08g0604 . 59 589 ARIADNE family AT1G65430 71.9 3.9e-239 824.3
Clacu11g0961 . 26 627 ARIADNE family AT1G65430 55.8 5.0e-186 647.9
Clacu08g0604 . 60 454 ARIADNE family AT2G31780 58.4 8.2e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72