Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g0987 ATGGGTAATCCCATTGAGGTTTACGGTGTCGCGGTTGTTGTTGTGGGGATGGTGTTGTTTGATGTAAGTGTTGCCCAATTTGAAGGAGGTGGAAACAGTCCATTCAGAGATGGCGACGGCAGCGGCAGGAGACAGGTGGAGATGGTACCGGCTATGTTTGTATTCGGAGACTCTCTCATTGACAATGGAAATAACAATAATCTTCCCTCTTTTGCCAAGGCCAACTATTTCCCCTATGGCATTGATTTCAATGGCGGCCCAACTGGGCGCTTCTCCAATGGCTACACCATGGTCGATGAAATAGCGGAGCTGCTAGGACTCCCATTAATCCCAGCCTTCTCTCAAGTTTCTGGACCCCAATCTCTGCATGGAGTCAACTATGCATCTGCTGCGGCCGGGATTCTTGACGCTACGGGGAGAAACTTTGTGAGTCGCATACCTTTCAATCAACAAATCAGAAACTTCGAGAACACGCTGGATGAGATTAGTAACAATGTAGGGGCAGGGAAGGTGGGAGAATCCATCGGACGGTGCATATTCTTTGTGGGAATGGGAAGCAACGACTACCTCAATAACTATCTTATGCCAAATTACCCCACTCGAAATCAGTACAATGCTGAACAGTACGCGGACTTGTTGGTCAGCCAATATACGGAGCAGCTCACTAGGCTGTACAATCTAGGAGGTAGAAGGTTTGCGATAGCAGGTTTAGGGCTGATGGGTTGCATTCCAAGCATCCTAGCACAGAGCCCATCAGGAAGGTGCTCAGAAGAAGTGAACCAACTTGTTGGACCATTCAATATAAATGTGAAGAGAATGATAAAGCAGCTGAATACCAATCTTCCAGGAGCAAGATATAGTTACATTGACATAGAACACATGTTCCAAGACTTGCTTCTCAATTCTAGATTTTATGGTTTAAGTGTTTTGAATAGAGGATGCTGTGGAATTGGGAGGAACAGAGGCCAAATCACTTGCCTTCCCTTCCAAACTCCTTGTAGTAATCGAGATGAGTACATCTTTTGGGATGCATTCCATCCTACTGAAGCAGTTAACATTATCATGGCTAGGAAGGCTTTTAATGGTGACCAATCTGTTATTTTCCCTTTCAATATCCAACAGCTAGCTACTTCTCTTTGA 1140 45.35 MGNPIEVYGVAVVVVGMVLFDVSVAQFEGGGNSPFRDGDGSGRRQVEMVPAMFVFGDSLIDNGNNNNLPSFAKANYFPYGIDFNGGPTGRFSNGYTMVDEIAELLGLPLIPAFSQVSGPQSLHGVNYASAAAGILDATGRNFVSRIPFNQQIRNFENTLDEISNNVGAGKVGESIGRCIFFVGMGSNDYLNNYLMPNYPTRNQYNAEQYADLLVSQYTEQLTRLYNLGGRRFAIAGLGLMGCIPSILAQSPSGRCSEEVNQLVGPFNINVKRMIKQLNTNLPGARYSYIDIEHMFQDLLLNSRFYGLSVLNRGCCGIGRNRGQITCLPFQTPCSNRDEYIFWDAFHPTEAVNIIMARKAFNGDQSVIFPFNIQQLATSL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11298299 11299694 - ClG42_11g0098700.10 Clacu11g0987 261864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g0987 379 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 46 376 IPR051238 -
Clacu11g0987 379 CDD SGNH_plant_lipase_like 50 363 IPR035669 -
Clacu11g0987 379 Gene3D SGNH hydrolase 43 364 IPR036514 -
Clacu11g0987 379 Pfam GDSL-like Lipase/Acylhydrolase 53 357 IPR001087 GO:0016788(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g0987 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1724 Clacu-Chr6:27862730 Clacu11g0987 Clacu-Chr11:11298299 3.80E-60 dispersed
Clacu07g1158 Clacu-Chr7:26244958 Clacu11g0987 Clacu-Chr11:11298299 4.90E-63 dispersed
Clacu08g0069 Clacu-Chr8:1569780 Clacu11g0987 Clacu-Chr11:11298299 6.00E-148 dispersed
Clacu08g0070 Clacu-Chr8:1581832 Clacu11g0987 Clacu-Chr11:11298299 3.40E-90 dispersed
Clacu10g0502 Clacu-Chr10:6077855 Clacu11g0987 Clacu-Chr11:11298299 2.10E-60 dispersed
Clacu10g0504 Clacu-Chr10:6107743 Clacu11g0987 Clacu-Chr11:11298299 4.10E-56 dispersed
Clacu11g0987 Clacu-Chr11:11298299 Clacu11g1209 Clacu-Chr11:19263197 1.50E-61 dispersed
Clacu11g0987 Clacu-Chr11:11298299 Clacu03g0730 Clacu-Chr3:8133820 2.00E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1661 . . . . . . . Bma01g02439 . . . . Car01g00778 . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00039 . . . . . . . . . . . . . . . . Cpe02g01018 . . . . . . . Cla11g00844 Cam11g0875 Cec11g0875 Cco11g0870 Clacu11g0987 Cmu11g0838 Cre11g1319 Lsi08g00048 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61