Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1015 ATGGCTGAATCTTTATCATCATCGTCGTTTCAACCCATTTCTACTCCGATCAATAATATTGCAGTTCAATATGATGTGTTCGTGAGTTTTCGAGGCGAAGATGTAAGAAATAATTTTGTTAGTCATCTTCAGGCAGCATTCGAACGCAAAGGAACCGCAACTTTTTTCGATGAAGAGCTCAAGAGAGGACAGCAAATTGCTCCCGCTCTTCTTAAAGCTATACACAACAATCTTCCATTTCATCGTCATCGTCCTTCCGATTTTCTACGGCGTAGATCCATCAAATGTCCGAAAGCAAACAGGGAGTTATGCAGAAGCCATTCACTAAACACCAGGAAACTCTCCAACAAGATGAAATACAAAGATGGAGGGATGCTCTTACGGAAATTGCAAATTTGTCTGGTTTGGATTTCGCTAACTGATCGTGTGGAGCGTATTGAGTCTTGTCTACGTGATTCCAATGACGATGTTCGCATTTTAGGCATTTGGGGAATGGGCGGCATTGGTAAAACTACAGTTGCCACAGCTTTGTTTCATAAAATAAAATATGAATTTGATGGTTATTGCTTTCTTGAGAACGTTAGGGAAAGTTCTGGTAGAAATGGACAGGGACTACCAAATTTACGAAATATGCTTCTATCTCAAGTTATGCAGGAACAACAACACCTTTCAATGTATATTTCACGAGCTTTCCTTAAAAATAGGTTGAGTGGAAAGAAGGTGCTCATTGTTCTTTATGATATTGATGACATAGAACAATTAGAGAATTTAGTTGGAGGACGCAATTGGTTTGGAGTAGGAAGTAGAGTTGTCATAACAACTAGAAACAGACAACTTCTTACTGATCAGGTAGATGAAGTTTATGGCTATGCAAAGGATCAGTTGTCTGATGAGGATGGTTTGCTTCTCTTTAGCCGCTATGCGTTTAGAACAAGCCAACCGCCAGAGGATTACCTTGAGCTTTCTAGAAAGGTTATGCATTATGCATCCGGCATTCCCTTAGCTCTCAAGCTCTTAGGTTCTTATCTACGTAAAAAGGACGAAAGAACGTGGAAAAGTGCATTGGCTAGACTAGAAAGATTTTCCGACGATGAAATATATGGGAAAGTTCTAGAACTAAGCTTTGAAGGACTTAATTCGAAGGAGAAAGACATTCTACTTGATGTAGCATGTTTCTTCAAGGGAGAGGATGTTGAACTTGCCAGTTTAGTATGGGAAGCTTGTGGCTTTTTGTCGCACGATGCTATTTCTGTACTTAGTGACAAGTGTCTTATATCGATGCAAAATAATAACTCTCGACTCTGGATGCATGATTTGATTCAAGAGATGTGGAAAGCAATTGTTCGGAAAGAGAGCGTTGAACCAGGGGACTTCAAAAATTCAATGCATAATTTGGACTTAGTTGTCAGACAACTGTGGAAAGGACACAGGACGTTCAAACGTTTAAAACATATTGACCTGAACAATTCTAAGCATCTATCTGAAATACCTGATCTATCAGGAGCTCAGTATCTTGAGCATATTGATTCACACGGCTGCACAGAATTATCTAAAATCCACTCTTCTGTCAGTACTCTAAGCAAACTCACTTATCTGAATCTAAGTGGTTGTAGGAAGCTACGAAATCTTGCGAGCAACATTTGTATGGAACGTCTCGAAAGGCTTGTTCTCCATGGTTGTGAAAACCTCCAAAACTTTCCAGACATTTCTGGTAATATGGAACATTTGTATGAATTTTCCCTACATGGAACTGGTGTGTCAAATCTGCCTTCATTCATTGAAAGTCTGACTGGTCTTAGTAAGCTTAAACTTTCAAACTGCAAAAAACTCGTGGGTCTTCCAAATAGCATCTGTAATTTGAAACGTCTCGAAAAACTTTTTCTCTCTGGTTGTGAAAACCTCCAACATCTTCCGGAGAACATTGGGAATCTAGAATCGTTATCAGAGTTTTATGTAGATGGAACTTCAATTAAACACGTCCCATCCTCCATTATCTATTTGAAGAATATTTCAAGATTGTCATTTGGTGGGTGTATAGGAATAATAAAGACATCATCTTCCCAATCCCATTGGTTGTCTAGGTTAGTTCCTAGAAGTAGAAGCAGCAGTAGTCCAAGTTGTATGGGTGGTTTGCAGTTGCCTCCTTTGGGGGGCTTTCAAAATCTTACTAGTCTTTGTCTTAGTAACTGCAATCTTGTGGAAGCGCCGAGTGGTCTACACAACTTGCCCTCCTTGAGTGAACTTGACTTGAGTGGAAATAACTTTGAGACCTTACCTCAAACCATATTCTACAATCTTTCTAGTTTATCTACTCTAGAGTTGAGTTATTGCACGAGGCTACGATCATTACCGGACCTTCCACCCAGCCTCCATACTTTGCTGGCAGATGAATGCACATCCCCGGAATCAATCATGAGCCTTAAATCTTTGTTCGGAGGAACTGGTCCTAGGAAAAGAGAAGGGCAGGAGTTATATGATCTGGGTATTTATCATGGTGGCCTAGGGCTTAAGGTGGGGGCGATGTACCCAGGGAGTGAAATTCCAGAATGGTTTAGTAATAATCAAACAGAGGGCAATACTGTAGCCCTCCAGCTTCCTCGACATTGTATAAATAATTCTTTGGCGTTTGCTCTTTGTCTTATTGTTTCTCAGGGTGAGGGTGACATGGCCTTTCATTCTGATGTCAGTGTTCACTTTCGATTGACATTTCGACACGATAGTGAGAATATCGACCGAAGCGGTTTCCATTTCTTGTGTGGAAGACAGAGCGGGGTGTCTTTTAAAGAAGATATTGTTGTTTTTGAACTTGTTCGGTGGGTATTTCGACATCGGCCGTGCCCCTGTAAAGGTGAAAAAGTGTGCAGTTCGCTTGGTATACGTGGAAGGAAAAACGCAAACTACTTTCTTACTCGGTTCCTTTGGATCCATCGGTTCAGGCCTATAACGCCTCCTGTACAAAGAGTGCTTATAATTAAGTTGTTTATCAGCCGACACTTCGAAGACCATGGAGCATATAATATTGTATGGCTGCGGTTGGGGTTGGTGGCTCTGTCGGTCTTCAATAATTCTGTGATGCCTGGTTCTTGCATCCAGGAGTCACCCAACTTCGATCCGCCCGTCGATTCTGCTATAGATCCGCAGGCGAAGCACAACAGATCTGCGCTACTGAACTGCTACAAAATCCGTATTATATTCCTCTTGTAG 3204 41.14 MAESLSSSSFQPISTPINNIAVQYDVFVSFRGEDVRNNFVSHLQAAFERKGTATFFDEELKRGQQIAPALLKAIHNNLPFHRHRPSDFLRRRSIKCPKANRELCRSHSLNTRKLSNKMKYKDGGMLLRKLQICLVWISLTDRVERIESCLRDSNDDVRILGIWGMGGIGKTTVATALFHKIKYEFDGYCFLENVRESSGRNGQGLPNLRNMLLSQVMQEQQHLSMYISRAFLKNRLSGKKVLIVLYDIDDIEQLENLVGGRNWFGVGSRVVITTRNRQLLTDQVDEVYGYAKDQLSDEDGLLLFSRYAFRTSQPPEDYLELSRKVMHYASGIPLALKLLGSYLRKKDERTWKSALARLERFSDDEIYGKVLELSFEGLNSKEKDILLDVACFFKGEDVELASLVWEACGFLSHDAISVLSDKCLISMQNNNSRLWMHDLIQEMWKAIVRKESVEPGDFKNSMHNLDLVVRQLWKGHRTFKRLKHIDLNNSKHLSEIPDLSGAQYLEHIDSHGCTELSKIHSSVSTLSKLTYLNLSGCRKLRNLASNICMERLERLVLHGCENLQNFPDISGNMEHLYEFSLHGTGVSNLPSFIESLTGLSKLKLSNCKKLVGLPNSICNLKRLEKLFLSGCENLQHLPENIGNLESLSEFYVDGTSIKHVPSSIIYLKNISRLSFGGCIGIIKTSSSQSHWLSRLVPRSRSSSSPSCMGGLQLPPLGGFQNLTSLCLSNCNLVEAPSGLHNLPSLSELDLSGNNFETLPQTIFYNLSSLSTLELSYCTRLRSLPDLPPSLHTLLADECTSPESIMSLKSLFGGTGPRKREGQELYDLGIYHGGLGLKVGAMYPGSEIPEWFSNNQTEGNTVALQLPRHCINNSLAFALCLIVSQGEGDMAFHSDVSVHFRLTFRHDSENIDRSGFHFLCGRQSGVSFKEDIVVFELVRWVFRHRPCPCKGEKVCSSLGIRGRKNANYFLTRFLWIHRFRPITPPVQRVLIIKLFISRHFEDHGAYNIVWLRLGLVALSVFNNSVMPGSCIQESPNFDPPVDSAIDPQAKHNRSALLNCYKIRIIFLL 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12321642 12328903 + ClG42_11g0101500.10 Clacu11g1015 261892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1015 1067 Gene3D - 21 77 IPR035897 -
Clacu11g1015 1067 Gene3D - 131 287 IPR027417 -
Clacu11g1015 1067 ProSiteProfiles TIR domain profile. 22 154 IPR000157 GO:0007165(InterPro)
Clacu11g1015 1067 Pfam TIR domain 23 76 IPR000157 GO:0007165(InterPro)
Clacu11g1015 1067 ProSiteProfiles Leucine-rich repeat profile. 744 765 IPR001611 GO:0005515(InterPro)
Clacu11g1015 1067 Pfam NB-ARC domain 141 361 IPR002182 GO:0043531(InterPro)
Clacu11g1015 1067 PRINTS Disease resistance protein signature 159 174 - -
Clacu11g1015 1067 PRINTS Disease resistance protein signature 329 343 - -
Clacu11g1015 1067 PRINTS Disease resistance protein signature 764 780 - -
Clacu11g1015 1067 PRINTS Disease resistance protein signature 235 249 - -
Clacu11g1015 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 388 IPR027417 -
Clacu11g1015 1067 Gene3D Ribonuclease Inhibitor 457 573 IPR032675 -
Clacu11g1015 1067 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 76 IPR035897 -
Clacu11g1015 1067 SMART LRR_typ_2 742 765 IPR003591 -
Clacu11g1015 1067 SMART LRR_typ_2 719 741 IPR003591 -
Clacu11g1015 1067 SMART LRR_typ_2 620 644 IPR003591 -
Clacu11g1015 1067 SMART LRR_typ_2 526 550 IPR003591 -
Clacu11g1015 1067 SUPERFAMILY L domain-like 435 788 - -
Clacu11g1015 1067 Pfam Leucine rich repeat 721 777 IPR001611 GO:0005515(InterPro)
Clacu11g1015 1067 Gene3D Ribonuclease Inhibitor 574 686 IPR032675 -
Clacu11g1015 1067 Pfam C-JID domain 843 892 IPR045344 -
Clacu11g1015 1067 Gene3D Ribonuclease Inhibitor 702 812 IPR032675 -
Clacu11g1015 1067 Gene3D - 294 379 IPR042197 -
Clacu11g1015 1067 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 469 590 IPR044974 GO:0006952(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1015 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1015 Clacu-Chr11:12321642 Clacu11g1263 Clacu-Chr11:21023574 8.70E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1683 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00805 Cam11g0842 Cec11g0828 . Clacu11g1015 Cmu11g0878 Cre11g1288 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013419 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 1 0 0 1 0 1 0 4 2 1 1 0 1 5 24