Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1018 ATGCGCACCTTCGCTTCTTTTATTTCCCCAATTCCCACTTTCACTCTCATCATCCATTCCTTAATCATGAACCCTTCTCTTTTCTTCCTTCCTTTTTCCCTTCTCTTCTTCATCTTCAACCTCGCCTCCGCCTGTAATCTCGCCGATCAGAACGCTCTTCTTGCTTTCAAATCCGCCATTACTGCCGACCCCTCCGGCATTTTAACCTCATGGAAATCCGGCGTCGACTGCTGCACTTGGGCCGGAGTCACTTGCTCCGTCCCCAATCGCGTCACCAGTCTCAGCCTCTACGGCCAACTCGACCGCTCCAACGCCTTCCTCTCCGGCACCATCTCCGCCTCTCTCTCCAACCTCCCTTACTTGGACGGAATCTACCTCGTCAATCTTCGAAACATTTCAGGCCCTTTTCCAACTTCACTCTTCAAACTCCCCAAACTCCTCTTCGTCTACATCGAGAACAACAAGCTTTCAGGTCAATTACCCGCCGCCATCGGAAATATGAGCCAACTAGAAGCACTCAGTCTTGAAGGTAACAGATTCACTGGTCCGATCCCGAGTTCAATTTCCAAATTGACTCGCCTGACTCAGCTTAAACTCGGTAGCAATCTTCTCACTGGATCCATTCCGATTGGAATCCAGCAACTCAAAAGTCTGACGTTCCTCAGCCTCGAACGGAATCGATTCACCGGTCCCGTTCCGGATTTTTGGGGATCATTTCCGGAGTTGAGGATTCTCAGACTTTCTCACAATAAACTCACCGGGAAAATTCCGCGCTCAATTTCAGCTCTGGCTCCGAAGCTTAATTACTTGGAGTTGGGGCACAATTTGATAACAGGTAATATCCCTGAATTTCTCGGAAATTTTAGGGCTCTTGATACTCTCGATCTCTCCTCCAATTTCATCTCTGGAGTTGTGCCGAAGAGCTTCAGGAATTTGACGAAGATATTCAACCTGGATCTATCACGGAATTCACTGGTGGATCCGTTCCCGGAGTTGTTGGTGAAAGGGATCGAGTCGCTGGATTTGTCGTACAACAAATTTCATCTCGGGAAAATTCCGAAATGGGTGACGTCGTCGCCGATAATATACTCTCTGAAATTGGCCAAATGCGGGATCAAGATGAAGCTGGACGATTGGAAGCCGAGCGAAACGTATTTCTACGATTACATTGATTTATCGGAGAACGAGATTTGGGGCAGTCCGGTGAATTTGTTGAACCGGACGGATTATTTGGTCGGATTTTGGGGAGCCGGAAACAAGTTGAATTTCAAGCTGCAAGATTTGAGGATAGTGAAGAGGTTGAAGTATTTGGATTTGTCGAGAAATTTGGTGTCCGGTAAAGTACCCGGCGGCGTGGTGGGGCTGGAAAAGTTGAACGTCAGCTACAATCATTTGTGCGGCCGGCTTCCAGCGACGAAGTTTCCGGCGGCGTCGTTTTTGGGAAATGATTGCTTGTGTGGGGCGCCGCTGCCGTCCTGCAAATGA 1485 48.69 MRTFASFISPIPTFTLIIHSLIMNPSLFFLPFSLLFFIFNLASACNLADQNALLAFKSAITADPSGILTSWKSGVDCCTWAGVTCSVPNRVTSLSLYGQLDRSNAFLSGTISASLSNLPYLDGIYLVNLRNISGPFPTSLFKLPKLLFVYIENNKLSGQLPAAIGNMSQLEALSLEGNRFTGPIPSSISKLTRLTQLKLGSNLLTGSIPIGIQQLKSLTFLSLERNRFTGPVPDFWGSFPELRILRLSHNKLTGKIPRSISALAPKLNYLELGHNLITGNIPEFLGNFRALDTLDLSSNFISGVVPKSFRNLTKIFNLDLSRNSLVDPFPELLVKGIESLDLSYNKFHLGKIPKWVTSSPIIYSLKLAKCGIKMKLDDWKPSETYFYDYIDLSENEIWGSPVNLLNRTDYLVGFWGAGNKLNFKLQDLRIVKRLKYLDLSRNLVSGKVPGGVVGLEKLNVSYNHLCGRLPATKFPAASFLGNDCLCGAPLPSCK 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12360316 12361800 - ClG42_11g0101800.10 Clacu11g1018 261895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1018 494 Gene3D Ribonuclease Inhibitor 217 494 IPR032675 -
Clacu11g1018 494 Pfam Leucine rich repeat N-terminal domain 48 86 IPR013210 -
Clacu11g1018 494 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Clacu11g1018 494 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515(InterPro)
Clacu11g1018 494 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515(InterPro)
Clacu11g1018 494 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 77 336 - -
Clacu11g1018 494 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 100 218 - -
Clacu11g1018 494 Pfam Leucine rich repeat 265 325 IPR001611 GO:0005515(InterPro)
Clacu11g1018 494 Gene3D Ribonuclease Inhibitor 47 213 IPR032675 -
Clacu11g1018 494 SMART LRR_typ_2 215 237 IPR003591 -
Clacu11g1018 494 SMART LRR_typ_2 239 263 IPR003591 -
Clacu11g1018 494 SMART LRR_typ_2 191 214 IPR003591 -
Clacu11g1018 494 SMART LRR_typ_2 143 167 IPR003591 -
Clacu11g1018 494 SMART LRR_typ_2 452 481 IPR003591 -
Clacu11g1018 494 SMART LRR_typ_2 288 311 IPR003591 -
Clacu11g1018 494 SUPERFAMILY L domain-like 75 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1018 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1702 Clacu-Chr10:30522574 Clacu11g1018 Clacu-Chr11:12360316 1.30E-11 dispersed
Clacu11g1018 Clacu-Chr11:12360316 Clacu03g1641 Clacu-Chr3:30050741 8.90E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1691 . . . . . . . . . . . . . . Sed05g2505 . . Bhi04g02557 Tan11g0037 Cmetu03g0795 . Hepe02g3470 . Lcy10g2364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00803 Cam11g0839 Cec11g0825 . Clacu11g1018 Cmu11g0881 Cre11g1284 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012402 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 0 1 1 26