Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1027 ATGAATGAGGAAACTATCCCATCTCCAAGAGTCCGAGAAAGGCTAGACCTCGACGAAAGCTTGCACTTCTTCCGCCGTCGAAAAGTAAGTTGTTGTTTGCTTCTGCCAGAATCGTATCATCGGAGACGCAGGCGGCGACTGTCCTCTCTCGCTGCTGGTTTTATCACTGTCCACCTTGCGACAGCCACCGCGACTGAAGGATTAAGGAACAATATGTTCAAGAAGGCGGCGGAAGCGAAGTTACACCAGAGATTATCTGGTGCAGACAGGAAGAAGCTGAAGAGGACTGTTAAAGAAAGGTTCCCCGGAGCTTCCGATGCCGATATTGATGTCTTGCTTCCTCCCAAGGTTGAGTTTTCTGTTGCCAAGTTCCAAAATCGCGTCCACATATATAGTCTAGAAGGAGGCTTTCCTATGTTTTTCGACATTGATGGGAGAGGAACTGAAATATTCCCCACAGTTTTTGCACTCTGGATGGTACCAGAGTTGTTGCCTGCCTTTGTTTTGAAGGGGGGTGAAGTCTCTCGCTATGTGATAGGAGGAGCAGACTTGATGTTCCCTGGTATTCACATTCCTGCTGAAGGTCTTCCTTCATTTTTATCTGGGGAACCATGGGCTGTGAAAGTCCCTGGCAATGCATCTCCTATTGCTGTTGGTGTTACCACCATGAGTAGCACTGAAGCATTAAAAGCAGGTTTACGTGGAAAGGCTTTGAGAATTCTACACTACTACAGGGATTCCCTTTGGGGATCGGTAGAGGGTCATTATGTGCCGAATGCAGGTTTCTTGGAAGATGTTGTATATGGAGATCCTGTTTTGGCATCATCTTCACAAACCGATGACTCTTGTGAAGGTACTGAAACTGCTGCTGATGCTTCAAATTATGGACAGAATGACAGCAGCAATAAAGAAGTTGGGGGATCTGTTGATGAAACTACAAGTGATGTTCTTGATGAGCCTGGGGTTGTTCTAACAGCACAGACAGATTCAACTACTGATGATATCGTTTCTAGTGTGAATGATTTGAAGGTTGTAAATGATATTTCCACTGAGGAACCAAATGTGCCACATACTCTATCAGCTGATGATGTGGATAAGCTTCTGGATAAATGTCTTCTTCAAGCCCTGCATACAACCGTGAAAGACAAAGACTTTCCACTTCCTGGAAGCACTCTATGGTCAAATCATGTATTGCCTTGTCGGCCTCCTGGCATGATGCTAGACATCAAGAAATCATCTTACAAGAAATTGTCAAAGTGGTTGCAAGCTAAATCCTCTACTGGACTGATTATAGTGAAAGAAGACAAGCATAAAAAAGAGACGGTTTTGTACTCTGTTAACCGTAAGCATCCAGACTACACTTCCTTTAAACCAGAGAAGCAACAGGTAGAGAAAATTGATCAGAGCGACAATCATGGTCCAAAAGAAAGTTTATCCAATAAAATGCTTGAAGTAGCAGAGATATACAAGCCAAGTGTGCATGTCAATCCCATTTTTTTTGCTGTGGGGGCGGACACTAGCAAACTTTACACTGCAGCAGAGGCTACTGATATTGTCTTCCAATACATTGAGAAAGAAAAATTGGAGAAACCAACAGAAAAGTCCAGAGTGGTCTTGGACGCAATATTGTGTGATGCACTGTTCAAGGGGGCCATTAAGAAAGGAACAACATATCCAACAGAAATTCATAAAAAAGATATAGGTTCAACATTTATCAGCCGGATGCAACCTCATCATATTGTAACAAGAGGAAGTGAGTCTGTTGTTCGCAAAGGTGCATTAAAGACTATTCAAATAATGACAGAGCGACGTCAAGGAAATAAGAAAGTTACAAGACTTTCTGGGTTGGAAACGTTCTTGTTGGATGCTGAAGCATTGGCATCAGAGCTTCAGAAAAAGTGTGCTTGCAGTACGACGGTGGCCGAGTTGCCTGGTAAAAAAGGGTATGAAGTTGTGGTCCAAGGTGGAGTCATCGATGACTTGGCAAGACATCTGATTGAACAATATGGGATTCCAAAAAAGTACATTGAACTATATATTCACAGGAAACTTACCAACCCCCGCCTGTATCATGCAAAAAAGGAAAAGCCTGAATCAAAAGATATGGTAGAAGTTACTGATGATGAGCGATTCGACCAGTTGACAACTGCTGACCTTCACCATTCCATCGCTCGTCTATCGATTGCCAACCTCGTCGCAATGAAATCGATACAGCCATTGCCGCTGTCATGA 2232 43.41 MNEETIPSPRVRERLDLDESLHFFRRRKVSCCLLLPESYHRRRRRRLSSLAAGFITVHLATATATEGLRNNMFKKAAEAKLHQRLSGADRKKLKRTVKERFPGASDADIDVLLPPKVEFSVAKFQNRVHIYSLEGGFPMFFDIDGRGTEIFPTVFALWMVPELLPAFVLKGGEVSRYVIGGADLMFPGIHIPAEGLPSFLSGEPWAVKVPGNASPIAVGVTTMSSTEALKAGLRGKALRILHYYRDSLWGSVEGHYVPNAGFLEDVVYGDPVLASSSQTDDSCEGTETAADASNYGQNDSSNKEVGGSVDETTSDVLDEPGVVLTAQTDSTTDDIVSSVNDLKVVNDISTEEPNVPHTLSADDVDKLLDKCLLQALHTTVKDKDFPLPGSTLWSNHVLPCRPPGMMLDIKKSSYKKLSKWLQAKSSTGLIIVKEDKHKKETVLYSVNRKHPDYTSFKPEKQQVEKIDQSDNHGPKESLSNKMLEVAEIYKPSVHVNPIFFAVGADTSKLYTAAEATDIVFQYIEKEKLEKPTEKSRVVLDAILCDALFKGAIKKGTTYPTEIHKKDIGSTFISRMQPHHIVTRGSESVVRKGALKTIQIMTERRQGNKKVTRLSGLETFLLDAEALASELQKKCACSTTVAELPGKKGYEVVVQGGVIDDLARHLIEQYGIPKKYIELYIHRKLTNPRLYHAKKEKPESKDMVEVTDDERFDQLTTADLHHSIARLSIANLVAMKSIQPLPLS 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12625859 12636968 + ClG42_11g0102700.10 Clacu11g1027 261904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1027 743 FunFam eukaryotic translation initiation factor 2D 594 678 - -
Clacu11g1027 743 Gene3D - 593 679 - -
Clacu11g1027 743 MobiDBLite consensus disorder prediction 453 474 - -
Clacu11g1027 743 MobiDBLite consensus disorder prediction 274 309 - -
Clacu11g1027 743 FunFam Eukaryotic translation initiation factor 2D isoform A 72 256 - -
Clacu11g1027 743 SUPERFAMILY SWIB/MDM2 domain 480 579 IPR036885 -
Clacu11g1027 743 MobiDBLite consensus disorder prediction 453 477 - -
Clacu11g1027 743 ProSiteProfiles PUA domain profile. 164 245 - -
Clacu11g1027 743 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 72 679 IPR039757 GO:0001731(PANTHER)|GO:0001731(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)
Clacu11g1027 743 CDD eIF2D_N 80 152 IPR048247 -
Clacu11g1027 743 Pfam Translation initiation factor SUI1 595 672 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu11g1027 743 SUPERFAMILY PUA domain-like 174 250 IPR015947 -
Clacu11g1027 743 CDD PUA_eIF2d-like 163 245 IPR048248 -
Clacu11g1027 743 ProSiteProfiles Translation initiation factor SUI1 family profile. 597 669 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu11g1027 743 MobiDBLite consensus disorder prediction 274 320 - -
Clacu11g1027 743 CDD eIF2D_C 597 677 IPR039759 -
Clacu11g1027 743 Pfam Pre-PUA-like domain 73 161 IPR041366 -
Clacu11g1027 743 SUPERFAMILY eIF1-like 562 678 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu11g1027 743 Gene3D - 70 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1027 K15027 - - csv:101219792 1123.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1717 . Blo12g00811 . . . . . . . . . . . . . . . Bhi04g02549 Tan11g0045 . . Hepe02g3467 . Lcy10g2359 . . . . . . . Cone4ag1153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00797 Cam11g0833 Cec11g0819 Cco11g0821 Clacu11g1027 Cmu11g0888 Cre11g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008392 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34