Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1028 ATGGCTTCCACTGGCGACACACAATCTCCTTCCTCACCTCCCAACCTTCCATGGAAGCGTAAGCTTGCCACTCTTTTCACTTCCATCCTTTTCCGACAAGCATTCCGATCAGATTTTACGGTCAACCGCCGCCTCCTCCGCCTTCTTGACCATAAAGTACCTCCTTCCACCTCTCGCGGCGTCGCCGCCTTCGACACGACCGCCGATTCCTCCTCTTCCGACCTTTGGATTCGTGTTTATAATCCTCTCACATTCTCCGACTCCGACTCCCATCCTCTGCCTGTTATCATATACTTTCACGGCGGAGGATTTGTTTTCGGCTCCGCTGATACTCCGCCCATCGACACCTTCTGTCGCGATTTTGCTCGCGAAATCGGAGCAATTGTCATCTCTGTCAACTACCGCCTCGCGCCGGAACACCGATTTCCGAGCCAATTCGACGACGGATTTCAAGTTCTTAAGGCAATCGACGAAGGAGTGATCTCTGAAACTCTTCCTGAAAGCGCCGATCTGAGGCGGTGTTTCATCGCCGGCGAAAGTGCCGGAGGAAACATAGCTCATCACGTGATGGTGAGAGCGGCGGAGTATCAATTCAAGAGGGTTAAGATAGCAGGCCTGATTTTGATTCAGCCATTTTTGGGAGGAGAAGAGCGGAGGGATTCAGAGCTTCGATTTGGGAGCGGATATAGAATGACTTTGGAAATGGCCGATTGGTTTTGGAAGGCGTGGTTGCCGGTCGGTTCGAACCGGGATCATCCGGCCGCCAACGTGGTTGTGTCGAACATTTCGGGGCTGAAGTTTCCACCGGCGCTTGTTGTGATTGGGGGTTTGGATTTGTTGAGAGATCGAAACAAAGAGTACAGTGAGTGGTTGGAGAAATCGGGTCAAGAAGTTCGGGTCGTGGAGTATCCTAATGGGACCCATGGGTTTTGTTGGAACCCAGATCTCCCCGAATATTCCATGCTGATGCAACATGCCAAAGAATTCACCCAAAGTTTCTCATAG 1005 51.64 MASTGDTQSPSSPPNLPWKRKLATLFTSILFRQAFRSDFTVNRRLLRLLDHKVPPSTSRGVAAFDTTADSSSSDLWIRVYNPLTFSDSDSHPLPVIIYFHGGGFVFGSADTPPIDTFCRDFAREIGAIVISVNYRLAPEHRFPSQFDDGFQVLKAIDEGVISETLPESADLRRCFIAGESAGGNIAHHVMVRAAEYQFKRVKIAGLILIQPFLGGEERRDSELRFGSGYRMTLEMADWFWKAWLPVGSNRDHPAANVVVSNISGLKFPPALVVIGGLDLLRDRNKEYSEWLEKSGQEVRVVEYPNGTHGFCWNPDLPEYSMLMQHAKEFTQSFS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12656330 12657334 + ClG42_11g0102800.10 Clacu11g1028 261905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1028 334 SUPERFAMILY alpha/beta-Hydrolases 54 329 IPR029058 -
Clacu11g1028 334 Pfam alpha/beta hydrolase fold 96 311 IPR013094 GO:0016787(InterPro)
Clacu11g1028 334 Gene3D alpha/beta hydrolase 6 333 IPR029058 -
Clacu11g1028 334 PANTHER ARYLACETAMIDE DEACETYLASE 37 324 IPR050466 GO:0009860(PANTHER)|GO:0052689(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1028 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1475 Clacu-Chr5:17808093 Clacu11g1028 Clacu-Chr11:12656330 3.70E-33 dispersed
Clacu09g0774 Clacu-Chr9:6951371 Clacu11g1028 Clacu-Chr11:12656330 4.30E-79 dispersed
Clacu11g1028 Clacu-Chr11:12656330 Clacu08g1729 Clacu-Chr8:26790003 1.60E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g898 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00796 Cam11g0832 Cec11g0818 Cco11g0820 Clacu11g1028 Cmu11g0889 . . . . . . . . . . . . . . . . . Sed06g0907 Cmo04g03140 . Cma04g03020 . Car04g02905 . . Cpe01g02619 Bhi01g02203 Tan04g1852 Cmetu07g0411 . Hepe02g0896 . . . . . . . . . Lsi03g00471 . . .
Vvi18g1718 . . . Bda03g00361 . Bpe04g00321 Bma04g00338 . . . . Cma09g01288 . . . Cpe06g00972 . . . . . . . . Cla08g00161 . Cec08g0097 Cco08g0221 . Cmu08g0153 Cre08g0140 . . . . . . . Cme09g00112 . . . . . . . . Sed10g1646 . Cmo09g01246 . . . Car09g01103 . . Bhi06g00128 Tan10g1852 Cmetu11g1682 . . . . Cla11g00796 Cam11g0832 Cec11g0818 Cco11g0820 Clacu11g1028 Cmu11g0889 . Lsi08g00162 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200