Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1042 ATGAAGCCACTCACTCTTCTTTGCATCTTCATCATTCTTTCCATTCTCTTGCAGGGTTTTTCACAGGCTTCCACTGCTGTGGATGAAGGGACCAACACAGTAGCTCTCAGCAAAAAGTATCACTATCATCCAAAAATCAATTGCAAGAGTGAATGCTCAAGGAGATGTAGTAAAGTGTTCAGAAAGAAGATATGTTTGCGTGCTTGTGGAACTTGCTGCAGTCGTTGCCACTGCGTTCCGCCCGGAACTTACGGCAACCACCAAGCTTGCCCTTGCTATGCTCGCCTCAAGACCCATGGCAATAAGCCCAAATGCCCCTAA 321 46.73 MKPLTLLCIFIILSILLQGFSQASTAVDEGTNTVALSKKYHYHPKINCKSECSRRCSKVFRKKICLRACGTCCSRCHCVPPGTYGNHQACPCYARLKTHGNKPKCP 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12888394 12890433 - ClG42_11g0104200.10 Clacu11g1042 261919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1042 106 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 1 106 - -
Clacu11g1042 106 Pfam Gibberellin regulated protein 47 106 IPR003854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1042 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1597 Clacu-Chr8:25765950 Clacu11g1042 Clacu-Chr11:12888394 6.40E-17 dispersed
Clacu10g1443 Clacu-Chr10:27616964 Clacu11g1042 Clacu-Chr11:12888394 1.20E-15 dispersed
Clacu11g1042 Clacu-Chr11:12888394 Clacu05g1991 Clacu-Chr5:28976841 8.30E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1414 . . . . . . . . . . . . . . . . . Bhi04g02523 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00782 Cam11g0814 Cec11g0796 Cco11g0801 Clacu11g1042 Cmu11g0903 Cre11g1258 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014690 0 1 0 0 0 1 0 1 1 0 1 1 1 0 1 1 1 0 1 1 0 1 0 1 0 0 1 2 1 1 19