Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1051 ATGGCTTTGAGTGCTATGAATCCAGGTCTCGCCTTATTGTTTTCACTTCTTTTGGTTGGTTGTTGCGGCTCTGCAGCTAATGTGGTATTGATTGGGACCAACGTTACTCTTTCGTTCGACTCCATTGAAGCTAATTTCGCTCCTTCAATAGAAAGTTCAGGGGAACCTGGGGTGTTATTTCTGGCCAAACCTCTGGATGCATGCTCGACATTGGAAAATAAAGCTGAGCTGCCTGTAAACTCCAGTTCACCATTTACGCTTATAATTAGAGGAGGATGTAGTTTCGAGGATAAAGTGAGGAGAGCCCAAGTGGCTGGATTTAAAGCTGCAATCATCTATGACAATGAAGATGGTGGCTTAATTGCGATGGCAGGGAGCTCGGCTGGCATTAAAATACATGCTGTATTTGTTACTAAAACATCTGGCGAGACATTGAAGAAGTACGCAGGCTTGGCTAACGTTGAGATATGGATAGTTCCAAGCTTTGAAAACTCTGCATGGTCCATCATGGCTATCTCCTTTATTTCTCTTCTTGCAATGTCTGCAGTGCTCGCTACTTGTTTCTTCGTTCGTAGGCATCGAATAAGACGGGGACGTCCTCGATCTTCTCATGCTCAAGAGTTTCGGGGAATGAGCAGGCGTGTAGTAAAAGCAATGCCAAGCCTGATATTTACTACTGCTTTAGAGGATAATTGCACATCAGTAACATGTGCCATATGCCTTGAGGACTATACTGCTGGCGAGAAGCTCAGAATTCTACCATGTCGTCACAAATTTCATGCCCTCTGTGTGGACTCTTGGCTTACTGCTTGGAGAACCTTCTGCCCAGTTTGCAAGCGAGATGCAAGAACTAGCACTGGTGATCCACCACCTTCAGAATCCACACCATTGCTTTCAAGCGCTCCCAGTTCTGTTGCTTCATCCTCAATATTATCTTCCGTGAGATCATCATTACCACCAAGCTCAGCCATTCAAATATCCCCAGCATCAAGATCGCCTTCGGTATCTCGGAACCACTCTCTCTCAAGCACCCCTTACCTTCAGCAGTCTCTGAGATCCTCCTACCGTCAATCTCCATCCTTGAGCGTGAGCAGAAGTTCAGTTGAACTTAGAAATGCATCTTCCCAAAGATCTTACACTTCTCATTTAGTTTCGCCGTATTCCTCGTGTTACCCATCCATTTCACCTTTACATTCAAGATACATGATTCCACTTATTCCAAGTCCAAGCAATGCCTCACCAAGCATCATTGGTTCCTCTAGTCATCAACATAATCCCTTACATTGTAGCGGGTCAGCTGCAAGCTTTTCTCCATTTGCTTCGGCCCAGTCTCTTCCTGAATGCTAA 1347 45.14 MALSAMNPGLALLFSLLLVGCCGSAANVVLIGTNVTLSFDSIEANFAPSIESSGEPGVLFLAKPLDACSTLENKAELPVNSSSPFTLIIRGGCSFEDKVRRAQVAGFKAAIIYDNEDGGLIAMAGSSAGIKIHAVFVTKTSGETLKKYAGLANVEIWIVPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRGRPRSSHAQEFRGMSRRVVKAMPSLIFTTALEDNCTSVTCAICLEDYTAGEKLRILPCRHKFHALCVDSWLTAWRTFCPVCKRDARTSTGDPPPSESTPLLSSAPSSVASSSILSSVRSSLPPSSAIQISPASRSPSVSRNHSLSSTPYLQQSLRSSYRQSPSLSVSRSSVELRNASSQRSYTSHLVSPYSSCYPSISPLHSRYMIPLIPSPSNASPSIIGSSSHQHNPLHCSGSAASFSPFASAQSLPEC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13072976 13077540 + ClG42_11g0105100.10 Clacu11g1051 261928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1051 448 SUPERFAMILY PA domain 76 163 IPR046450 -
Clacu11g1051 448 ProSiteProfiles Zinc finger RING-type profile. 237 279 IPR001841 -
Clacu11g1051 448 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 26 159 - -
Clacu11g1051 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 284 IPR013083 -
Clacu11g1051 448 Gene3D - 28 158 - -
Clacu11g1051 448 Pfam PA domain 85 145 IPR003137 -
Clacu11g1051 448 MobiDBLite consensus disorder prediction 282 303 - -
Clacu11g1051 448 MobiDBLite consensus disorder prediction 316 343 - -
Clacu11g1051 448 SUPERFAMILY RING/U-box 230 292 - -
Clacu11g1051 448 SMART ring_2 237 278 IPR001841 -
Clacu11g1051 448 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 197 284 - -
Clacu11g1051 448 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 45 298 IPR051653 -
Clacu11g1051 448 MobiDBLite consensus disorder prediction 287 303 - -
Clacu11g1051 448 Pfam Ring finger domain 236 279 IPR001841 -
Clacu11g1051 448 CDD PA_C_RZF_like 24 166 IPR044744 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1051 K15692 - - csv:101218128 672.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1051 Clacu-Chr11:13072976 Clacu02g0070 Clacu-Chr2:710233 7.00E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1441 . . . . . . . . . . . . . . Sed11g2306 . . Bhi04g02514 Tan11g0071 Cmetu03g2001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00772 Cam11g0807 Cec11g0788 Cco11g0794 Clacu11g1051 Cmu11g0912 Cre11g1252 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005523 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 40