Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1053 | ATGGAAGCTCTAAACAGTTGGAGGGAGACTCGGTTGTTTTATCTAGTTCATTTTACTCTTATGATTGGTCAACAGAGTATGAGCTCTTCATCAACTCAACTCTGTGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGCAAATGCATTCGGTAGTCGACTAGATACGAGCATATCACCTATTATAAAAGTGGATGACTGTGTAGACATTAAACCCGAGTTTGTTCCTTTTGAATCAATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGCGACTGTTGGAGCAGGAGCTAGAAAGAACTAAGCAACAGAAGGGTACCAGCTGCTTAGTAGATATCAGCCACTTCGGATTCAGCGGATTTGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCACCGAACTCAGAAAGGCGTTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCCTAAACCATTACCACAATCTGTTTTGCATGAAAGCCAATGCTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTATTTGGAGAACATCGGCAGAGCGTTTTTTCCACTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTTCTGAAGCCATACTTTGAGCCATTAAATGAACAACAAAGAGCCGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCTGAAGATGCGCTCACACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGTGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAACTAGAAGCACTGGAGAGCTTCGTAAGCCAGCCGAGTGTGTGTTACTCTTTTCTTGAACAGGCAGACCATCTCAGGCAACAAACATTGAAGAGAATGTCTCACATCCTAACCACCAAACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGCATCCTCAGTTCGCTCTGGGCTACTCGACCTCGTGAACCTGCCTAG | 1179 | 44.78 | MEALNSWRETRLFYLVHFTLMIGQQSMSSSSTQLCASRMGIYEPFHQINSWANAFGSRLDTSISPIIKVDDCVDIKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLRLLEQELERTKQQKGTSCLVDISHFGFSGFVNPGIAAFEMEYNHWVEEQQRQITELRKALQVHTTDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGIWRTSAERFFHWIGGFRPSELLNVLKPYFEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIASDPIGSYISQMGDGMEKLEALESFVSQPSVCYSFLEQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRILSSLWATRPREPA | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13091079 | 13095763 | - | ClG42_11g0105300.10 | Clacu11g1053 | 261930 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1053 | 392 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 27 | 391 | - | - | |
Clacu11g1053 | 392 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 104 | 119 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g1053 | 392 | Coils | Coil | 127 | 147 | - | - | |
Clacu11g1053 | 392 | Coils | Coil | 268 | 288 | - | - | |
Clacu11g1053 | 392 | ProSiteProfiles | DOG1 domain profile. | 169 | 387 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Clacu11g1053 | 392 | Pfam | Seed dormancy control | 186 | 261 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Clacu11g1053 | 392 | Coils | Coil | 180 | 200 | - | - | |
Clacu11g1053 | 392 | SMART | brlzneu | 97 | 150 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g1053 | 392 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 99 | 143 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu11g1053 | 392 | FunFam | BZIP family transcription factor | 100 | 150 | - | - | |
Clacu11g1053 | 392 | Gene3D | - | 100 | 152 | - | - | |
Clacu11g1053 | 392 | SUPERFAMILY | Leucine zipper domain | 101 | 142 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu07g0936 | Clacu-Chr7:23323509 | Clacu11g1053 | Clacu-Chr11:13091079 | 1.40E-91 | dispersed | |
Clacu10g1719 | Clacu-Chr10:30697355 | Clacu11g1053 | Clacu-Chr11:13091079 | 2.30E-65 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48644 | PF14144 | DOG1 | 2.00E-28 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1053 | K14431 | - | csv:101217648 | 685.256 |