Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1053 ATGGAAGCTCTAAACAGTTGGAGGGAGACTCGGTTGTTTTATCTAGTTCATTTTACTCTTATGATTGGTCAACAGAGTATGAGCTCTTCATCAACTCAACTCTGTGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGCAAATGCATTCGGTAGTCGACTAGATACGAGCATATCACCTATTATAAAAGTGGATGACTGTGTAGACATTAAACCCGAGTTTGTTCCTTTTGAATCAATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGCGACTGTTGGAGCAGGAGCTAGAAAGAACTAAGCAACAGAAGGGTACCAGCTGCTTAGTAGATATCAGCCACTTCGGATTCAGCGGATTTGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCACCGAACTCAGAAAGGCGTTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCCTAAACCATTACCACAATCTGTTTTGCATGAAAGCCAATGCTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTATTTGGAGAACATCGGCAGAGCGTTTTTTCCACTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTTCTGAAGCCATACTTTGAGCCATTAAATGAACAACAAAGAGCCGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCTGAAGATGCGCTCACACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGTGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAACTAGAAGCACTGGAGAGCTTCGTAAGCCAGCCGAGTGTGTGTTACTCTTTTCTTGAACAGGCAGACCATCTCAGGCAACAAACATTGAAGAGAATGTCTCACATCCTAACCACCAAACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGCATCCTCAGTTCGCTCTGGGCTACTCGACCTCGTGAACCTGCCTAG 1179 44.78 MEALNSWRETRLFYLVHFTLMIGQQSMSSSSTQLCASRMGIYEPFHQINSWANAFGSRLDTSISPIIKVDDCVDIKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLRLLEQELERTKQQKGTSCLVDISHFGFSGFVNPGIAAFEMEYNHWVEEQQRQITELRKALQVHTTDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGIWRTSAERFFHWIGGFRPSELLNVLKPYFEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIASDPIGSYISQMGDGMEKLEALESFVSQPSVCYSFLEQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRILSSLWATRPREPA 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13091079 13095763 - ClG42_11g0105300.10 Clacu11g1053 261930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1053 392 PANTHER TRANSCRIPTION FACTOR TGA9 27 391 - -
Clacu11g1053 392 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 104 119 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1053 392 Coils Coil 127 147 - -
Clacu11g1053 392 Coils Coil 268 288 - -
Clacu11g1053 392 ProSiteProfiles DOG1 domain profile. 169 387 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Clacu11g1053 392 Pfam Seed dormancy control 186 261 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Clacu11g1053 392 Coils Coil 180 200 - -
Clacu11g1053 392 SMART brlzneu 97 150 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1053 392 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 99 143 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu11g1053 392 FunFam BZIP family transcription factor 100 150 - -
Clacu11g1053 392 Gene3D - 100 152 - -
Clacu11g1053 392 SUPERFAMILY Leucine zipper domain 101 142 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0936 Clacu-Chr7:23323509 Clacu11g1053 Clacu-Chr11:13091079 1.40E-91 dispersed
Clacu10g1719 Clacu-Chr10:30697355 Clacu11g1053 Clacu-Chr11:13091079 2.30E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48644 PF14144 DOG1 2.00E-28 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1053 K14431 - csv:101217648 685.256