Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1059 ATGGCGACTTCACCGACCGTTAAAAGAGATGAGGAACATAGCCTTTCTAAACAGGATGATGGAGGAGAGCCTACAGTGGAGATTGAACAGTCCTTGTCAGTTAGTGAGGATAGTGCCACTCAAGCAAAGGATAAAGGGCTTGGTGAAGTAGCAAAGGACAAGAACATCGATTCCAAATGTGATGCTCAAGAGGAAATAGTGGAGAGGGAGACCGTCCAAAGTGAGGTACAACACAAGTTGGAAACCAAACAGGATTGCCAGTCTAAATCTGAAGGTGAAAAGTCGGACCAGACTATTAGAAATGACGACTCTAATGAAAAGCTAGATGAGGATAAGAATGCAGCATCTGAATCATCATCAGATGATTCAGACAATGATGGTGTAGATTCTAAGGGTCAAACCAGGACAAACCAACGAAGTGGAGAAGTTATTGGCGAGGAGAAATCTCCAGAACCAGTCTTTGATGGGACTGAGGTTCCTGGGATTGAAGGTAGTGGGAATTTGTCAAACCGTTCCATGGATAGTGATTCAGAGAGTCAAGGTGTCGTTGACAGGGCTTTGGCACTAAAAAACTTTGTTAGAGAAAAGGGAGTTGTTGCAGTATCTACCGTTTTGCGTCGTTTTTCAGGAAAAAAAGATGAAGAAAGTCTGGATACACCTAATGACGAGACTAAGGATGATTCTGCTTCCAATAAAGAAAATGAAGCCAAGGAAATCCCTGAAAAACCATTGGAAAGATCTGCTTGGAATCCCCTCAACTATATTAAGATATCACGTGATGCTGATGCACAAATCAAAACTGAGCAGGTGGAGGATGTTGCTGGAGAATCAAACTTAGATGTTGTTATTAAAGGCAGAATTGTTCTGTACACACGGTTAGGTTGTCAAGAATGCAAAGAGGCTAGACTATTTTTGTTTTGGAAGAGACTTAGATACGTTGAGATCAATATTGATGTTTATCCGAGTAGAAAGTTGGAGCTTGAGAAAATTGCCGGGTCTTCTGCCGTTCCAAAGGTATTTTTCAATACAGTCCTTATTGGAGGTTTGAACGAACTAAAAGAGTTGGACGAGTCTGGCAAGCTTAATGAGAAAATTGAGTATCTGAAAGCTGAAGCACCAACCCTTGAAGCCCCTTTACCACCTCTTTCTGGTGAAGATGATGTCTCCAGTAGTGGGACTGTTGATGAATTGGCTATGATTGTTCGAAAAATGAAAGAATCTATTGTTGTTAAGGACCGGTACTGCAAAATGCGACGATTCACCAGCTGTTTCCTAGGCTCAGAAGCTGTGGATTTCTTGTCAGAGGATCAATACTTGGAAAGAGAAGAGGCTATTGAATTTGGACGAAAGCTCGCAAGCAAACTTTTTTTCCAACATGTTCTCGAGGAAAATCTATTTGAAGATGGTAGCCACTTATACCGATTCTTGGATGATGACCCCGTTGTGGCAACTCAATGCCACAATGTCGCAAGAGGTATAATTGAGGTGAAGCCAAAGCCGATAACAGATATTTCATCAAGGCTGAGATTTTTATCCTTCGCCATTTTAGAAGCCTATGTATCAGAGGATGGAAAGCATGTAGATTACAGAAGTATTCATGGGAGTGAGGAATTTGCTAGGTATTTGAGAATTGTTGAAGAGCTCCAAAGAGTTGAAGTGCATAATTTGGCACGGGAAGAGAAAATCGCTTTCTTTATTAATCTCTACAATATGATGGCCATCCATGCAATATTAGTATGTGGACATCCTGTTGGAGCGCTGGAAAGAAGGAAACTGTTTGGAGACTTCAAATATGTTATTGGAGGGGCCACCTACTCACTTTCAGCTATTCAAAACGGAATTTTGAGGGGCAATCAGAGACCACCTTACAATCTCATGAAACCATTTGGTGCAAGAGATAAACGTTCTAAAGTTTCTCTTCCGTATGTAGAACCTTTAATCCATTTTGCACTAGTATGTGGTACTCGATCTGGGCCTGCCCTTCGATGCTATTCTCCAGGCAATGTGGATCAAGAGTTGATGGAAGCAGCACAGAGTTTCTTAAGAGAGGGAGGACTTGTCATGGATTTAAATAACAATGCTGCATCAGTTAATATGATTCTCAAATGGTTTAGCACGGACTTCGGTAAGAACGAGCAAGAAGTCCTGAAGCATGCTTCAAACTACTTGAAACCAGATGATTCTCAAGCTCTGCTTGAATTGCTTGCCAATTCCCAGTTGAAGTTGGGGAAATTACTTCTCAGGCTGAAGCCTTCATGGGAAGGAAGGCAGTGGGATGCTATAAGCTTGTGGCTGTGA 2298 41.78 MATSPTVKRDEEHSLSKQDDGGEPTVEIEQSLSVSEDSATQAKDKGLGEVAKDKNIDSKCDAQEEIVERETVQSEVQHKLETKQDCQSKSEGEKSDQTIRNDDSNEKLDEDKNAASESSSDDSDNDGVDSKGQTRTNQRSGEVIGEEKSPEPVFDGTEVPGIEGSGNLSNRSMDSDSESQGVVDRALALKNFVREKGVVAVSTVLRRFSGKKDEESLDTPNDETKDDSASNKENEAKEIPEKPLERSAWNPLNYIKISRDADAQIKTEQVEDVAGESNLDVVIKGRIVLYTRLGCQECKEARLFLFWKRLRYVEINIDVYPSRKLELEKIAGSSAVPKVFFNTVLIGGLNELKELDESGKLNEKIEYLKAEAPTLEAPLPPLSGEDDVSSSGTVDELAMIVRKMKESIVVKDRYCKMRRFTSCFLGSEAVDFLSEDQYLEREEAIEFGRKLASKLFFQHVLEENLFEDGSHLYRFLDDDPVVATQCHNVARGIIEVKPKPITDISSRLRFLSFAILEAYVSEDGKHVDYRSIHGSEEFARYLRIVEELQRVEVHNLAREEKIAFFINLYNMMAIHAILVCGHPVGALERRKLFGDFKYVIGGATYSLSAIQNGILRGNQRPPYNLMKPFGARDKRSKVSLPYVEPLIHFALVCGTRSGPALRCYSPGNVDQELMEAAQSFLREGGLVMDLNNNAASVNMILKWFSTDFGKNEQEVLKHASNYLKPDDSQALLELLANSQLKLGKLLLRLKPSWEGRQWDAISLWL 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13155701 13160553 + ClG42_11g0105900.10 Clacu11g1059 261936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1059 765 CDD DEP 396 474 - -
Clacu11g1059 765 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 408 475 IPR000591 GO:0035556(InterPro)
Clacu11g1059 765 MobiDBLite consensus disorder prediction 42 129 - -
Clacu11g1059 765 ProSiteProfiles Glutaredoxin domain profile. 275 372 - -
Clacu11g1059 765 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 68 742 - -
Clacu11g1059 765 Gene3D Glutaredoxin 283 368 - -
Clacu11g1059 765 Gene3D - 385 482 IPR036388 -
Clacu11g1059 765 Pfam Glutaredoxin 287 346 IPR002109 -
Clacu11g1059 765 SUPERFAMILY Thioredoxin-like 284 366 IPR036249 -
Clacu11g1059 765 MobiDBLite consensus disorder prediction 211 243 - -
Clacu11g1059 765 MobiDBLite consensus disorder prediction 1 179 - -
Clacu11g1059 765 MobiDBLite consensus disorder prediction 1 24 - -
Clacu11g1059 765 ProSiteProfiles DEP domain profile. 404 477 IPR000591 GO:0035556(InterPro)
Clacu11g1059 765 SUPERFAMILY Winged helix DNA-binding domain 395 484 IPR036390 -
Clacu11g1059 765 MobiDBLite consensus disorder prediction 163 179 - -
Clacu11g1059 765 SMART DEP_3 404 477 IPR000591 GO:0035556(InterPro)
Clacu11g1059 765 Pfam Protein of unknown function, DUF547 554 681 IPR006869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1059 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0708 Clacu-Chr1:7732884 Clacu11g1059 Clacu-Chr11:13155701 1.10E-99 dispersed
Clacu11g1059 Clacu-Chr11:13155701 Clacu01g1737 Clacu-Chr1:29534683 2.10E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g352 . . . . . . . . . . . . . . Sed11g1510 . . Bhi04g02500 Tan11g0084 Cmetu09g1872 . Hepe02g3440 . Lcy10g2331 . . . . . . . . Cone7ag1572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00765 Cam11g0798 Cec11g0780 Cco11g0785 Clacu11g1059 Cmu11g0919 Cre11g1244 . . Chy03g00066 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007851 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 1 2 1 1 36