Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1083 ATGAATAATGTCCCGAAACTTCGAAATGCTATGATCAAGGATAAAATATATTTACCTCTTGATGAAGAATATGAGTCAAGGAAGTCCAACAAGAAAAAGGCGACATCCCTTATAGTTGGTGTTTCTATTGGAGGAGCATGTTTGGTTGCAACAATTATAGGATGCTGCATCTTTTTCTGTTTTCGTAAAAAGAAGAAGCAATATCCCATTGGATCTGTAAGCAAAGAAGCTGGGCCTTCTCCTCCCGTTTCTGATCCTATTTCAAACAAAGATTTGCCTCCTGCTCCTCTTTTAAACTCCTTCCAAAGTCAGAGCATTCCTTCTTATCCCTCTTCCAAATCTGATCTTGAGACACCTACCACCAACCATGACATTCAAGTATTCAATTATGCTGAACTCGAGAAAGCTACCGATAATTTTAACCGTTCTCGAGAGCTTGGCGATGGAGGATTTGGCACTGTTTACTATGGGAAGCTTGTTGATGGGCGTGAAGTTGCTGTGAAGCGTCTCTATGAACATAACTGCAAACGAGTGGAACAGTTCATGAATGAAGTGGACATCCTTGCTCATTTACAACACAAGAACCTTGTCAAACTCTATGGCTACACCTCCAGATTTAGCCAAGGCCTTCTCCTTGTCTATGAATACATTCCCAATGGAACCGTGGCCGACCATCTCCATGGATCTCGGGTGAAGCTCGGTTTGCTCAGTTGGTCAATTCGGTTGCGAATTGCCATCGAAACAGCAAATGCACTCATGTACCTCCATCGCTCGGACATCATCCACCGCGACGTCAAAACCAATAACATTCTCCTGGATAACAGCTTCACTGTCAAAGTGGCTGATTTTGGCCTTTCAAGGCTGTTCCCTACGGATGTAACTCATGTGTCCACTGCCCCACAAGGCACACCAGGCTATGTTGATCCTGAGTACTACCAATGTTATCAACTCACAACTAAGAGTGACATATACAGCTTTGGAGTGGTTTTGATTGAGCTTATATCGTCGCTAAGAGCAGTTGACACAGATAGGAAACGACAGGATATCAACTTGAGCAATATGGCAGTGAGTAAAATACAAAGTCAGGCATTGAATGAGTTGATGGATCCAAAGCTGGGTTTCAAGGAGAATCATGAAGTTATGAGTGCGATGACATCAGTTGCGGAGTTGGCCTTTCGCTGCCTTCAACAAGAAAGGGACATGAGGCCTTCAATGGAAGAAGTGGTGGAGGCACTAAGGGAGATTGAGAATGGAAAATCAAGTTCTGGGACTGATAGAGTTGTCGATATAGAAGTCGTTGGAGACGATACCGAGCTCATAAAGAGAACAACACCCTCATTTTCGCCCAATTCTGTCATAGCTGACAACTGGGTCAGCAGCTCTACCTTCACAAATTCCTTGTGA 1404 43.66 MNNVPKLRNAMIKDKIYLPLDEEYESRKSNKKKATSLIVGVSIGGACLVATIIGCCIFFCFRKKKKQYPIGSVSKEAGPSPPVSDPISNKDLPPAPLLNSFQSQSIPSYPSSKSDLETPTTNHDIQVFNYAELEKATDNFNRSRELGDGGFGTVYYGKLVDGREVAVKRLYEHNCKRVEQFMNEVDILAHLQHKNLVKLYGYTSRFSQGLLLVYEYIPNGTVADHLHGSRVKLGLLSWSIRLRIAIETANALMYLHRSDIIHRDVKTNNILLDNSFTVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTTKSDIYSFGVVLIELISSLRAVDTDRKRQDINLSNMAVSKIQSQALNELMDPKLGFKENHEVMSAMTSVAELAFRCLQQERDMRPSMEEVVEALREIENGKSSSGTDRVVDIEVVGDDTELIKRTTPSFSPNSVIADNWVSSSTFTNSL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13526810 13529612 + ClG42_11g0108300.10 Clacu11g1083 261960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1083 467 ProSitePatterns Protein kinases ATP-binding region signature. 146 168 IPR017441 GO:0005524(InterPro)
Clacu11g1083 467 ProSiteProfiles Protein kinase domain profile. 140 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1083 467 FunFam Wall-associated receptor kinase-like 20 217 425 - -
Clacu11g1083 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1083 467 SUPERFAMILY Protein kinase-like (PK-like) 123 414 IPR011009 -
Clacu11g1083 467 Gene3D Phosphorylase Kinase; domain 1 111 216 - -
Clacu11g1083 467 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 112 216 - -
Clacu11g1083 467 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 27 462 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Clacu11g1083 467 SMART serkin_6 140 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1083 467 Gene3D Transferase(Phosphotransferase) domain 1 217 438 - -
Clacu11g1083 467 Pfam Protein kinase domain 141 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2676 Clacu-Chr5:34373875 Clacu11g1083 Clacu-Chr11:13526810 8.50E-78 dispersed
Clacu07g1489 Clacu-Chr7:29493896 Clacu11g1083 Clacu-Chr11:13526810 1.30E-143 dispersed
Clacu11g1083 Clacu-Chr11:13526810 Clacu11g2096 Clacu-Chr11:31737545 2.20E-62 dispersed
Clacu11g1083 Clacu-Chr11:13526810 Clacu06g1572 Clacu-Chr6:26586358 1.40E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73965 PF00069 Pkinase 5.00E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1083 - - - 0.0