Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1106 ATGGGGCTATTGATAAGTTGCTCTTGGTTCTACATCGGCTTCAAGAGATGGAAGCTCATAAAACTCAGAGAATATTTCTTCCGACAAAATGGAGGATTAATGTTTGAGCAACAACTTTCCATCCGAGACGACGCCGCACAAACCGCTAAACTTTTCACAGCTGAGGAATTACGGAAAGCCACTAACAACTACTCTGACGACCGAATCGTCGGCAAAGGCGGCTTCGGAACAGTCTACAAAGGCATCCTCCCTACCGGCGCCGCCGTCGCCATCAAGAAATCCAAGATCGTCGATAAAACTCAGAACAAACAGTTCATCAACGAAGTCATTGTCCTCTCACAGATCAATCATCGAAACACAGTCAAGCTCTTAGGCTGTTGCTTGGAAGAAGAAGTTCCTCTTCTCGTCTACGAATTCGTCTCCAATGGCACGCTCTTCGATCACATTCACAAGAGAAAATCACAGCGCTCTATTCCTTGGAAGATCCGCCTCAAAATCGCGTCCGAAACCGCCGGAGTACTCTCCTATCTTCACTCCTCCGCCACTATTCCGATCATTCACAGAGATGTCAAATCCACAAACATTCTCCTCGACGAAAATTTCACTGCGAAGGTCTCCGATTTTGGGGCTTCCAAACTAGTTCCTTTAGATCAGGTCGATTTGAACACGATCGTGCAAGGAACTCTGGGATACCTAGATCCAGAGTATTTGCAAACTAGTCAATTGACGGAGAAGAGTGACGTGTACAGTTTCGGCGTTGTTTTGGTCGAATTGATGACCGGAAAAGCTCCTCTGTCCTTCAGCCGATCGGAGGAAGAACGGATTCTATCAATGCATTTTCTAATCGCTCTGAAACAGAATCGGCTTGGAGAAATTGTGGATAGAAGTTTAGGCGGCGATGTGGATGTGGAGCAACTGAAGGAAGTTGCGAACCTTGCGAAGAGGTGTTTGAGAGTGAAGGGAGAAGAAAGGCCGACGATGAAGGAGGTTGCTGCAGAGCTTGAAGGATTATGTCAAATGGCGTTCGGTCATCCATGGAATGTTGATAAATCTTCGTCTGTGGAAGGAGGAGAGCTTTTGGTTAATGAAGAAGATAAAAATGAAGTTCCATTTGATAGTTTGCTTTTCCCCATCAACCAAATGATACCAAACGCACGTTCTGCCAGGTAA 1170 45.9 MGLLISCSWFYIGFKRWKLIKLREYFFRQNGGLMFEQQLSIRDDAAQTAKLFTAEELRKATNNYSDDRIVGKGGFGTVYKGILPTGAAVAIKKSKIVDKTQNKQFINEVIVLSQINHRNTVKLLGCCLEEEVPLLVYEFVSNGTLFDHIHKRKSQRSIPWKIRLKIASETAGVLSYLHSSATIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQVDLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKAPLSFSRSEEERILSMHFLIALKQNRLGEIVDRSLGGDVDVEQLKEVANLAKRCLRVKGEERPTMKEVAAELEGLCQMAFGHPWNVDKSSSVEGGELLVNEEDKNEVPFDSLLFPINQMIPNARSAR 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14104833 14106002 - ClG42_11g0110600.10 Clacu11g1106 261983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1106 389 SMART serkin_6 64 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1106 389 FunFam Wall-associated receptor kinase 2 140 356 - -
Clacu11g1106 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1106 389 FunFam Wall-associated receptor kinase 2 34 139 - -
Clacu11g1106 389 Gene3D Phosphorylase Kinase; domain 1 33 139 - -
Clacu11g1106 389 ProSiteProfiles Protein kinase domain profile. 64 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1106 389 CDD STKc_IRAK 70 337 - -
Clacu11g1106 389 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 4 338 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Clacu11g1106 389 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524(InterPro)
Clacu11g1106 389 Gene3D Transferase(Phosphotransferase) domain 1 140 345 - -
Clacu11g1106 389 SUPERFAMILY Protein kinase-like (PK-like) 48 336 IPR011009 -
Clacu11g1106 389 Pfam Protein kinase domain 64 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0771 Clacu-Chr8:17743888 Clacu11g1106 Clacu-Chr11:14104833 7.40E-94 dispersed
Clacu11g0813 Clacu-Chr11:8049981 Clacu11g1106 Clacu-Chr11:14104833 2.70E-76 dispersed
Clacu11g1106 Clacu-Chr11:14104833 Clacu11g1513 Clacu-Chr11:26300242 4.30E-64 dispersed
Clacu11g1106 Clacu-Chr11:14104833 Clacu11g2096 Clacu-Chr11:31737545 2.00E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73967 PF00069 Pkinase 2.70E-51 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1106 - - - 0.0