Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1130 GCTCCATGTAAGAGGAAGGGAGGAGTAAGGTTCACAATCAATGGGCATTCCTACTTCAACTTAGTGCTAATAACCAACGTCGGGGGCGCCGGGGATGTGCATGCGGTGTCCGTGAAAGGATCTAGAACTGGTTGGCAATCAATGTCCAGAAATTGGGGACAGAACTGGCAAAGCCACACCTATTTGGATGGTCAAACCCTCTCTTTCAAGCTCACTACTAGCGACGGCCGTACGCTTATTTCCAACAATGTCGTTCCTGCCGGCTGGTCCTTTGGCCAGACCTTCACCGGCGCCCAATTCCGGTGA 306 52.29 APCKRKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWQSMSRNWGQNWQSHTYLDGQTLSFKLTTSDGRTLISNNVVPAGWSFGQTFTGAQFR 101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15813750 15814056 - ClG42_11g0113000.10 Clacu11g1130 262007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1130 101 PANTHER EXPANSIN-A15 2 100 IPR002963 GO:0009664(InterPro)
Clacu11g1130 101 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 18 97 IPR007117 -
Clacu11g1130 101 Pfam Expansin C-terminal domain 9 86 IPR007117 -
Clacu11g1130 101 Gene3D - 8 100 IPR036749 -
Clacu11g1130 101 PRINTS Expansin/Lol pI family signature 83 97 IPR007118 GO:0005576(InterPro)
Clacu11g1130 101 PRINTS Expansin/Lol pI family signature 45 59 IPR007118 GO:0005576(InterPro)
Clacu11g1130 101 SUPERFAMILY PHL pollen allergen 5 97 IPR036749 -
Clacu11g1130 101 PRINTS Expansin signature 83 99 IPR002963 GO:0009664(InterPro)
Clacu11g1130 101 PRINTS Expansin signature 19 40 IPR002963 GO:0009664(InterPro)
Clacu11g1130 101 PRINTS Expansin signature 7 19 IPR002963 GO:0009664(InterPro)
Clacu11g1130 101 PRINTS Expansin signature 54 75 IPR002963 GO:0009664(InterPro)
Clacu11g1130 101 FunFam Expansin 8 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0714 Clacu-Chr11:7020692 Clacu11g1130 Clacu-Chr11:15813750 1.00E-43 dispersed
Clacu11g1130 Clacu-Chr11:15813750 Clacu05g2616 Clacu-Chr5:33929896 5.10E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1130 - - - 0.0