Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1134 | ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGGCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCCGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGAATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCATAACAAAACAGAGAGCATGAAGATATCCGAAGCTCTAGAAATGCAAATGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTCTCTCAATTGGCTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCGGAGGGAGATTGTAAGAGATTAACAATGCATAAAAGTGATGAGGAACACGAGGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA | 891 | 40.4 | MQNHQQMNLVLSTDAKPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQPSETNAQLKLEEMQRKGGNFDGEENKDRSQNHNKTESMKISEALEMQMEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHKSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 15909002 | 15910349 | - | ClG42_11g0113400.10 | Clacu11g1134 | 262011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1134 | 296 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 16 | 71 | IPR006447 | GO:0003677(InterPro) | |
Clacu11g1134 | 296 | SUPERFAMILY | Homeodomain-like | 15 | 71 | IPR009057 | - | |
Clacu11g1134 | 296 | MobiDBLite | consensus disorder prediction | 229 | 267 | - | - | |
Clacu11g1134 | 296 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 13 | 73 | IPR017930 | - | |
Clacu11g1134 | 296 | FunFam | Myb family transcription factor | 15 | 73 | - | - | |
Clacu11g1134 | 296 | Gene3D | - | 15 | 73 | - | - | |
Clacu11g1134 | 296 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 3 | 277 | IPR046955 | GO:0003700(InterPro) | |
Clacu11g1134 | 296 | Pfam | Myb-like DNA-binding domain | 18 | 69 | IPR001005 | - | |
Clacu11g1134 | 296 | MobiDBLite | consensus disorder prediction | 90 | 109 | - | - | |
Clacu11g1134 | 296 | MobiDBLite | consensus disorder prediction | 218 | 267 | - | - | |
Clacu11g1134 | 296 | Pfam | MYB-CC type transfactor, LHEQLE motif | 112 | 159 | IPR025756 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu10g1325 | Clacu-Chr10:26219895 | Clacu11g1134 | Clacu-Chr11:15909002 | 1.80E-38 | dispersed | |
Clacu10g1675 | Clacu-Chr10:30103845 | Clacu11g1134 | Clacu-Chr11:15909002 | 6.70E-21 | dispersed | |
Clacu11g0408 | Clacu-Chr11:3838314 | Clacu11g1134 | Clacu-Chr11:15909002 | 4.80E-10 | dispersed | |
Clacu11g1134 | Clacu-Chr11:15909002 | Clacu11g1835 | Clacu-Chr11:29499845 | 4.50E-13 | dispersed | |
Clacu11g1134 | Clacu-Chr11:15909002 | Clacu02g1922 | Clacu-Chr2:32774216 | 7.60E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48648 | PF00249 | Myb_DNA-binding | 1.10E-06 | CL0123 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1134 | - | - | - | 0.0 |