Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1134 ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGGCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCCGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGAATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCATAACAAAACAGAGAGCATGAAGATATCCGAAGCTCTAGAAATGCAAATGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTCTCTCAATTGGCTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCGGAGGGAGATTGTAAGAGATTAACAATGCATAAAAGTGATGAGGAACACGAGGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA 891 40.4 MQNHQQMNLVLSTDAKPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQPSETNAQLKLEEMQRKGGNFDGEENKDRSQNHNKTESMKISEALEMQMEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHKSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15909002 15910349 - ClG42_11g0113400.10 Clacu11g1134 262011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1134 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
Clacu11g1134 296 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Clacu11g1134 296 MobiDBLite consensus disorder prediction 229 267 - -
Clacu11g1134 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Clacu11g1134 296 FunFam Myb family transcription factor 15 73 - -
Clacu11g1134 296 Gene3D - 15 73 - -
Clacu11g1134 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 277 IPR046955 GO:0003700(InterPro)
Clacu11g1134 296 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Clacu11g1134 296 MobiDBLite consensus disorder prediction 90 109 - -
Clacu11g1134 296 MobiDBLite consensus disorder prediction 218 267 - -
Clacu11g1134 296 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1325 Clacu-Chr10:26219895 Clacu11g1134 Clacu-Chr11:15909002 1.80E-38 dispersed
Clacu10g1675 Clacu-Chr10:30103845 Clacu11g1134 Clacu-Chr11:15909002 6.70E-21 dispersed
Clacu11g0408 Clacu-Chr11:3838314 Clacu11g1134 Clacu-Chr11:15909002 4.80E-10 dispersed
Clacu11g1134 Clacu-Chr11:15909002 Clacu11g1835 Clacu-Chr11:29499845 4.50E-13 dispersed
Clacu11g1134 Clacu-Chr11:15909002 Clacu02g1922 Clacu-Chr2:32774216 7.60E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48648 PF00249 Myb_DNA-binding 1.10E-06 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1134 - - - 0.0