Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1134 ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGGCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCCGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGAATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCATAACAAAACAGAGAGCATGAAGATATCCGAAGCTCTAGAAATGCAAATGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTCTCTCAATTGGCTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCGGAGGGAGATTGTAAGAGATTAACAATGCATAAAAGTGATGAGGAACACGAGGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA 891 40.4 MQNHQQMNLVLSTDAKPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQPSETNAQLKLEEMQRKGGNFDGEENKDRSQNHNKTESMKISEALEMQMEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHKSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15909002 15910349 - ClG42_11g0113400.10 Clacu11g1134 262011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1134 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
Clacu11g1134 296 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Clacu11g1134 296 MobiDBLite consensus disorder prediction 229 267 - -
Clacu11g1134 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Clacu11g1134 296 FunFam Myb family transcription factor 15 73 - -
Clacu11g1134 296 Gene3D - 15 73 - -
Clacu11g1134 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 277 IPR046955 GO:0003700(InterPro)
Clacu11g1134 296 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Clacu11g1134 296 MobiDBLite consensus disorder prediction 90 109 - -
Clacu11g1134 296 MobiDBLite consensus disorder prediction 218 267 - -
Clacu11g1134 296 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1134 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1325 Clacu-Chr10:26219895 Clacu11g1134 Clacu-Chr11:15909002 1.80E-38 dispersed
Clacu10g1675 Clacu-Chr10:30103845 Clacu11g1134 Clacu-Chr11:15909002 6.70E-21 dispersed
Clacu11g0408 Clacu-Chr11:3838314 Clacu11g1134 Clacu-Chr11:15909002 4.80E-10 dispersed
Clacu11g1134 Clacu-Chr11:15909002 Clacu11g1835 Clacu-Chr11:29499845 4.50E-13 dispersed
Clacu11g1134 Clacu-Chr11:15909002 Clacu02g1922 Clacu-Chr2:32774216 7.60E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0372 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.5e-88 322.4
Clacu02g1922 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Clacu07g0217 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Clacu09g2308 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Clacu01g2176 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Clacu05g1216 . 246 446 G2-like Transcription Factor Family AT5G16560 56.5 7.9e-45 178.3
Clacu09g1167 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 7.0e-41 165.2
Clacu05g2133 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.3e-40 161.0
Clacu08g1709 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Clacu05g2494 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.5e-53 204.9
Clacu08g0656 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.0e-52 201.4
Clacu03g0131 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 3.2e-60 229.2
Clacu04g0629 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.1e-74 275.0
Clacu10g1634 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.8e-69 257.7
Clacu05g0372 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.5e-88 322.4
Clacu02g1922 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Clacu07g0217 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Clacu09g2308 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Clacu01g2176 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Clacu11g1134 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 1.2e-49 194.1
Clacu09g2308 . 1 379 G2-like Transcription Factor Family AT1G79430 55.0 2.8e-86 315.8
Clacu02g1922 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Clacu01g2175 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.0e-56 216.1
Clacu04g0629 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Clacu10g1634 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.2e-82 301.6
Clacu04g0629 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48648 PF00249 Myb_DNA-binding 1.10E-06 CL0123 Clacu TF