Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1155 ATGGGGTCCTGCTTGTCTTCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACTTCTCCGGCTAAGCATCATCGGAGCAAGAACAGTTCCAAGAGGCGATATGGTTCTAGGAATTCCTCCTTTGGGGATCTCTCACTTCATCGGATCCCCGGCAGGCTCTTCGCTAATGGCTTCACTGATGTCGCGTCTCTGTTCACCCAGCAGGGCAAGAAAGGGACCAATCAGGATGCCATGATTGTTTGGGAGAATTTCGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTTAACTTGACCACGGATGATGTTCATAGAGAGATCAATCTTAATACAGGAAGTATGAACTCGGATGAAGCTACTTCCTTTTTATCTGCTGAAGAAGAGTCAAGGGCCTCCACTGATGTTGATGGAACGGAAAAGCAACCTGAAATTTTCCATACTCTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTTATGGACTGGGAACTCAGAATGCACCAAACTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTATTGTTAAACAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGATGACTCGCTTGTTGCCATTCAATTGACTGTGGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAGGTGTAGAGGTCGTGTCTTTGCTCTCCAAGATGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCTCGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCAGAAATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTTCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTCCAAAACGTACTATTGCAGCTCGAACTCTGGTCGAAACTGCCATTAAAGCATGGAAACATAAATACCCAACTTCCAAGATTGATGACTGTGCGGTCGTTTGCCTCTTCCTCGACTCAAACTCCAGCAATCTATCATCTGCTTCCAATACCAAACCGGAAGAGCAACAAAGTTTAACAGAACAAGTCAGCACTGCAGTTGAGAATGAAAATTTCTGTGTCCCAAATGGTCTGAATCGTTCAGGAACTGTCCGAACCACCAGCAAGGAGATTTTGCAGGATGGAAGTGATGAAGAAGAAGATGAATCGAAGGAGGAAGAACATTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCGCGCGTAAACACTTTGGTAACCCTGCCAAGATTCGATCCTGGAAAAGAAGATAAGAAAGGGCAGAAGATAAGAAAAGTTATAAAAATTGAAGTTGAGAGAGGTCGGCCCAGCCTTATTAGTGCGTCTGGGGAATTGTTGACACTCTCGTATCGGTAG 1548 45.48 MGSCLSSESRSPIPGSPTSPAKHHRSKNSSKRRYGSRNSSFGDLSLHRIPGRLFANGFTDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREINLNTGSMNSDEATSFLSAEEESRASTDVDGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKDDSLVAIQLTVDLKPNLPAEAERIRRCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVASAPKRTIAARTLVETAIKAWKHKYPTSKIDDCAVVCLFLDSNSSNLSSASNTKPEEQQSLTEQVSTAVENENFCVPNGLNRSGTVRTTSKEILQDGSDEEEDESKEEEHSEMGIEWSALEGVSRVNTLVTLPRFDPGKEDKKGQKIRKVIKIEVERGRPSLISASGELLTLSYR 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16443496 16446603 - ClG42_11g0115500.10 Clacu11g1155 262032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1155 515 FunFam probable protein phosphatase 2C 33 56 383 - -
Clacu11g1155 515 MobiDBLite consensus disorder prediction 146 166 - -
Clacu11g1155 515 CDD PP2Cc 61 380 IPR001932 -
Clacu11g1155 515 SUPERFAMILY PP2C-like 61 381 IPR036457 -
Clacu11g1155 515 MobiDBLite consensus disorder prediction 1 16 - -
Clacu11g1155 515 Gene3D - 59 382 IPR036457 -
Clacu11g1155 515 SMART PP2C_4 52 378 IPR001932 -
Clacu11g1155 515 MobiDBLite consensus disorder prediction 1 39 - -
Clacu11g1155 515 PANTHER PROTEIN PHOSPHATASE 35 379 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu11g1155 515 MobiDBLite consensus disorder prediction 419 453 - -
Clacu11g1155 515 MobiDBLite consensus disorder prediction 386 405 - -
Clacu11g1155 515 Pfam Protein phosphatase 2C 130 359 IPR001932 -
Clacu11g1155 515 ProSiteProfiles PPM-type phosphatase domain profile. 61 380 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1564 Clacu-Chr2:29032715 Clacu11g1155 Clacu-Chr11:16443496 1.30E-94 dispersed
Clacu03g1036 Clacu-Chr3:18360288 Clacu11g1155 Clacu-Chr11:16443496 3.00E-145 dispersed
Clacu04g0720 Clacu-Chr4:21408872 Clacu11g1155 Clacu-Chr11:16443496 1.20E-94 dispersed
Clacu06g0474 Clacu-Chr6:5517466 Clacu11g1155 Clacu-Chr11:16443496 4.80E-83 dispersed
Clacu06g0555 Clacu-Chr6:6292837 Clacu11g1155 Clacu-Chr11:16443496 2.20E-26 dispersed
Clacu08g0598 Clacu-Chr8:13261460 Clacu11g1155 Clacu-Chr11:16443496 1.70E-134 dispersed
Clacu10g0354 Clacu-Chr10:4496676 Clacu11g1155 Clacu-Chr11:16443496 8.50E-132 dispersed
Clacu11g1155 Clacu-Chr11:16443496 Clacu11g1978 Clacu-Chr11:30743185 1.10E-17 dispersed
Clacu11g1155 Clacu-Chr11:16443496 Clacu02g0125 Clacu-Chr2:1330347 1.90E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1155 - - - 0.0