Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1179 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGTGTCAGACCCTTCGAGTTCATACCAAAAAATCATAATAGTTGCGGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTTGTCGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTTGCCGTGTTTACAGTCAGGGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCAACACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTACTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTATGGAGGAAAGCCAAAAGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCTCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGCCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAATTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGCTGGAGGTCCATTAACGGTTTGCGCCTTCCTCCCGCGAACGTTAGGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTCGTACTGGGTGGAATTGCTTCTTTTGCAAGCGCAATGTGTGCTATGTTCGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAGTGGGGGCCGGCCATTGA 1488 47.58 MEHGDVVSKGMVSDPSSSYQKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVREKQFERLEIDEEATPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPKGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGIVNIIFTICMGSTVVVTKVAERWRSINGLRLPPANVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTVGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17638432 17640010 + ClG42_11g0117900.10 Clacu11g1179 262056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1179 495 NCBIfam sucrose/proton symporter 19 482 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Clacu11g1179 495 SUPERFAMILY MFS general substrate transporter 22 484 IPR036259 -
Clacu11g1179 495 CDD MFS_SLC45_SUC 31 476 - -
Clacu11g1179 495 PANTHER SUGAR TRANSPORTER 14 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Clacu11g1179 495 Gene3D MFS general substrate transporter like domains 16 486 IPR036259 -
Clacu11g1179 495 Pfam MFS/sugar transport protein 28 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1179 K15378 - - csv:116401998 902.894
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1120 Clacu-Chr11:14860938 Clacu11g1179 Clacu-Chr11:17638432 8.20E-286 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu11g1179 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.2e-174 607.8
Clacu11g1120 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.6 6.7e-174 607.4
Clacu08g1351 . 32 484 Sucrose Transporter Gene Family AT1G22710 51.4 1.8e-134 476.5
Clacu11g1179 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 2.1e-172 602.4
Clacu11g1120 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 1.3e-171 599.7
Clacu08g1351 . 31 484 Sucrose Transporter Gene Family AT2G14670 52.1 2.1e-132 469.5
Clacu11g1179 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 5.0e-144 508.1
Clacu11g1120 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 3.2e-143 505.4
Clacu08g1351 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 5.5e-111 398.3
Clacu09g2214 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.1e-182 635.6
Clacu11g1179 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 5.7e-162 567.8
Clacu11g1120 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 1.3e-161 566.6
Clacu08g1351 . 31 484 Sucrose Transporter Gene Family AT5G06170 50.8 5.9e-127 451.4
Clacu11g1179 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.2 1.5e-170 596.3
Clacu11g1120 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 9.7e-170 593.6
Clacu08g1351 . 31 484 Sucrose Transporter Gene Family AT5G43610 51.5 1.3e-129 460.3
Clacu08g1351 . 18 485 Sucrose Transporter Gene Family AT1G09960 70.4 3.3e-197 684.9
Clacu11g1120 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.5 5.7e-133 471.5
Clacu11g1179 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 3.7e-132 468.8
Clacu11g1120 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 4.5e-170 594.7
Clacu11g1179 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 1.7e-169 592.8
Clacu08g1351 . 31 484 Sucrose Transporter Gene Family AT1G71880 52.7 3.5e-130 462.2
Clacu11g1120 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Clacu11g1179 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Clacu11g1120 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 4.5e-170 594.7
Clacu11g1179 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 1.7e-169 592.8
Clacu08g1351 . 31 484 Sucrose Transporter Gene Family AT1G71880 52.7 3.5e-130 462.2
Clacu11g1179 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 5.2e-174 607.8
Clacu11g1120 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.6 6.7e-174 607.4
Clacu08g1351 . 32 484 Sucrose Transporter Gene Family AT1G22710 51.4 1.8e-134 476.5
Clacu09g2214 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.1e-182 635.6
Clacu08g1351 . 18 485 Sucrose Transporter Gene Family AT1G09960 70.4 3.3e-197 684.9
Clacu11g1120 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.5 5.7e-133 471.5
Clacu11g1179 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 3.7e-132 468.8
Clacu11g1120 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Clacu11g1179 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Clacu11g1179 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.2 1.5e-170 596.3
Clacu11g1120 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 9.7e-170 593.6
Clacu08g1351 . 31 484 Sucrose Transporter Gene Family AT5G43610 51.5 1.3e-129 460.3
Clacu11g1179 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 5.0e-144 508.1
Clacu11g1120 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 3.2e-143 505.4
Clacu08g1351 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 5.5e-111 398.3
Clacu11g1179 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 2.1e-172 602.4
Clacu11g1120 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 1.3e-171 599.7
Clacu08g1351 . 31 484 Sucrose Transporter Gene Family AT2G14670 52.1 2.1e-132 469.5
Clacu11g1179 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 5.7e-162 567.8
Clacu11g1120 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 1.3e-161 566.6
Clacu08g1351 . 31 484 Sucrose Transporter Gene Family AT5G06170 50.8 5.9e-127 451.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60