Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1211 ATGGCCACTGTTTCTTGCCAACCTTCCGATTTGGCACCCCTTCTCGGCTCAGCAGCCACCGCGAATTCAACCGCCATAGCCGAGTTCCTATGCTCAAGATTCACTACCATAGCCACCACTTTCAGCTCCACCACCTACGCCGTCGACAACACATACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTGGGGTTTGCCATGCTTTGTGCTGGCTCGGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCTGCCGGTGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCAGCCACTTTTTTGGCCTCTCCAATTTCCCAAACCCCTCTACTGATTATAGCTTCTTTCTCTATCAATGGGCTTTTGCTATTGCTGCTGCAGGCATCACCAGTGGTTCCATTGCTGAGCGAACTCAATTTGTTGCCTATCTCATCTATTCTAGCATTCTTACTGGTTTCGTTTATCCCATAGTCTCTCATTGGTTTTGGTCTGCCGACGGGTGGGCTAGCCCAACCCGACCCAGTAACCTTATGTTCAATTCAGGGGCAATCGACTTTGCCGGATCAGGTGTGGTCCACATGGTCGGCGGCATAGCTGGTCTCTGGGGTGCCTTAATCGAAGGCCCTCGGATCGGCCGGTTTGATCGATCTGGCCGTTCTGTAGCCCTTCGCGGCCATAGTGCCTCCTTAGTAGTTCTTGGCTCTTTCCTCCTTTGGTTCGGGTGGTACGGGTTCAACCCAGGTTCATTTCTAACAATCTCCAAATCATACAATGATGGTCGTCCTTACTACGGACAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACAACCCTCTTTACAAAACGCTTATTAGTTGGCCATTGGAACGTAATCGATGTATGCAATGGCCTTTTAGGTGGATTTGCCGCTATCACGTCTGGTTGTGCTGTTGTTGAGCCATGGGCTGCGGTGATATGTGGATTTGTAGCATCCTGGGTGTTAACTGGCTTCAACAAGCTAGCTGAGAAGGTCAGCTACGATGACCCACTAGAGGCGGCACAACTGCATGGCGGGTGTGGGGCATGGGGCTTGATATTCACAGGATTATTTGCAAGAAAGGAGTATGTAGCAGAGGTTTACCAAGCCGGGCGTCCATATGGGTTGTTGATGGGTGGCGGAGGGAGGTTGTTGGCAGCCCAATTGGTGGAGATAATGGCGATAATTGGGTGGGTTTCTGTAACGATGGGGGGATTGTTTTATGGGCTGAAGAAGGTGAAATTGTTGAGAATATCAAGGGAAGATGAGATGGCTGGGATGGATTTGACAAGACATGGAGGCTTTGCTTATGTATATAATGATGAGGAGGATCCGTCTGCAAAGCCATCTGGATTTATGATGAGGAGAATTGAGCCTGCTAATGAAACTCCTCCTCAACAGAATTCTAGTTCAGGGATGGTAGCTGTTTGA 1536 50.59 MATVSCQPSDLAPLLGSAATANSTAIAEFLCSRFTTIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGSHFFGLSNFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSILTGFVYPIVSHWFWSADGWASPTRPSNLMFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLTGFNKLAEKVSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYQAGRPYGLLMGGGGRLLAAQLVEIMAIIGWVSVTMGGLFYGLKKVKLLRISREDEMAGMDLTRHGGFAYVYNDEEDPSAKPSGFMMRRIEPANETPPQQNSSSGMVAV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19412029 19414350 + ClG42_11g0121100.10 Clacu11g1211 262088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1211 511 FunFam Ammonium transporter 30 487 - -
Clacu11g1211 511 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu11g1211 511 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu11g1211 511 PANTHER AMMONIUM TRANSPORTER 19 481 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Clacu11g1211 511 Gene3D Ammonium transporter AmtB like domains 30 487 IPR029020 -
Clacu11g1211 511 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu11g1211 511 SUPERFAMILY Ammonium transporter 46 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0139 Clacu-Chr7:1778540 Clacu11g1211 Clacu-Chr11:19412029 6.00E-209 dispersed
Clacu11g1211 Clacu-Chr11:19412029 Clacu11g1213 Clacu-Chr11:19548758 2.70E-263 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1211 K03320 - csv:101222356 926.006