Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1302 ATGGCATCGACTTCCTCGAATTCGCCCTGTGCAGCTTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCTTATTTTCCGCCGGATCAGCCACAGAAATTCGCCAATGTTCATAAGGTATTCGGAGCCAGCAATGTCACAAAACTTCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCCCTGATTTCGCCGCCCTCCACTGTTTCCACCGTCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGCCTCTATCACGATCAATCTTTTCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGAAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCTGTCAATGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 657 52.05 MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSTVSTVAHGQRNHQPAFNFARDQPHSLYHDQSFPRDQQQQQMMLRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22050335 22050991 - ClG42_11g0130200.10 Clacu11g1302 262179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1302 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Clacu11g1302 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 155 - -
Clacu11g1302 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1388 Clacu-Chr1:25208404 Clacu11g1302 Clacu-Chr11:22050335 7.70E-42 dispersed
Clacu01g2572 Clacu-Chr1:35981163 Clacu11g1302 Clacu-Chr11:22050335 2.00E-31 dispersed
Clacu02g1367 Clacu-Chr2:26849147 Clacu11g1302 Clacu-Chr11:22050335 2.80E-45 dispersed
Clacu06g1830 Clacu-Chr6:28860152 Clacu11g1302 Clacu-Chr11:22050335 8.60E-47 dispersed
Clacu09g1968 Clacu-Chr9:34538593 Clacu11g1302 Clacu-Chr11:22050335 7.90E-44 dispersed
Clacu11g0724 Clacu-Chr11:7107804 Clacu11g1302 Clacu-Chr11:22050335 7.20E-35 dispersed
Clacu11g0751 Clacu-Chr11:7346825 Clacu11g1302 Clacu-Chr11:22050335 1.90E-37 dispersed
Clacu11g1302 Clacu-Chr11:22050335 Clacu10g1381 Clacu-Chr10:26924184 5.10E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48655 PF03195 LOB 4.10E-43 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1302 - - - 0.0