Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1302 | ATGGCATCGACTTCCTCGAATTCGCCCTGTGCAGCTTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCTTATTTTCCGCCGGATCAGCCACAGAAATTCGCCAATGTTCATAAGGTATTCGGAGCCAGCAATGTCACAAAACTTCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCCCTGATTTCGCCGCCCTCCACTGTTTCCACCGTCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGCCTCTATCACGATCAATCTTTTCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGAAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCTGTCAATGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG | 657 | 52.05 | MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSTVSTVAHGQRNHQPAFNFARDQPHSLYHDQSFPRDQQQQQMMLRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 22050335 | 22050991 | - | ClG42_11g0130200.10 | Clacu11g1302 | 262179 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1302 | 218 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - | |
Clacu11g1302 | 218 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 7 | 155 | - | - | |
Clacu11g1302 | 218 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 106 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1388 | Clacu-Chr1:25208404 | Clacu11g1302 | Clacu-Chr11:22050335 | 7.70E-42 | dispersed | |
Clacu01g2572 | Clacu-Chr1:35981163 | Clacu11g1302 | Clacu-Chr11:22050335 | 2.00E-31 | dispersed | |
Clacu02g1367 | Clacu-Chr2:26849147 | Clacu11g1302 | Clacu-Chr11:22050335 | 2.80E-45 | dispersed | |
Clacu06g1830 | Clacu-Chr6:28860152 | Clacu11g1302 | Clacu-Chr11:22050335 | 8.60E-47 | dispersed | |
Clacu09g1968 | Clacu-Chr9:34538593 | Clacu11g1302 | Clacu-Chr11:22050335 | 7.90E-44 | dispersed | |
Clacu11g0724 | Clacu-Chr11:7107804 | Clacu11g1302 | Clacu-Chr11:22050335 | 7.20E-35 | dispersed | |
Clacu11g0751 | Clacu-Chr11:7346825 | Clacu11g1302 | Clacu-Chr11:22050335 | 1.90E-37 | dispersed | |
Clacu11g1302 | Clacu-Chr11:22050335 | Clacu10g1381 | Clacu-Chr10:26924184 | 5.10E-46 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48655 | PF03195 | LOB | 4.10E-43 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1302 | - | - | - | 0.0 |