Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1310 ATGTTGGAGGGTGGTCAAAAATTCACTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAGTCTCATACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGCCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACACTTGATTTAAGGAAGCTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACACTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAGTATGCGAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAAAGTCGTTCTGTCCCACTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCATAGGGACTTGAAATCGGACAACCTTTTGATTTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACCTCTATAGCTTTGGTATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCATTCCAGAATATGACAGCTGTTCAGGCCGCCTTTGCAGTCGTAAACAAAGGCGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTATTGAGCGACATCATGACCCGGTGCTGGGATGCCAACCCTGATGTTAGGCCGTCATTTACCGAGGTGGTCCGAATGCTTGAGAATGCGCAGACTGAGATCATGACGACAGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA 1242 46.46 MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22301673 22309494 + ClG42_11g0131000.10 Clacu11g1310 262187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1310 413 Gene3D Transferase(Phosphotransferase) domain 1 215 408 - -
Clacu11g1310 413 FunFam Serine/threonine-protein kinase isoform 1 122 214 - -
Clacu11g1310 413 SMART serkin_6 132 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1310 413 Pfam Protein tyrosine and serine/threonine kinase 133 386 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1310 413 PRINTS Tyrosine kinase catalytic domain signature 210 223 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1310 413 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1310 413 PRINTS Tyrosine kinase catalytic domain signature 248 266 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1310 413 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1310 413 PRINTS Tyrosine kinase catalytic domain signature 294 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1310 413 ProSiteProfiles Protein kinase domain profile. 132 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1310 413 CDD STKc_MAP3K-like 139 386 - -
Clacu11g1310 413 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
Clacu11g1310 413 FunFam serine/threonine-protein kinase HT1 215 408 - -
Clacu11g1310 413 SUPERFAMILY Protein kinase-like (PK-like) 117 386 IPR011009 -
Clacu11g1310 413 PANTHER SERINE-THREONINE PROTEIN KINASE 75 388 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu11g1310 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2385 Clacu-Chr1:34526617 Clacu11g1310 Clacu-Chr11:22301673 1.00E-78 dispersed
Clacu03g0811 Clacu-Chr3:9132426 Clacu11g1310 Clacu-Chr11:22301673 1.40E-72 dispersed
Clacu06g1845 Clacu-Chr6:28974531 Clacu11g1310 Clacu-Chr11:22301673 1.20E-61 dispersed
Clacu10g0039 Clacu-Chr10:798985 Clacu11g1310 Clacu-Chr11:22301673 2.70E-70 dispersed
Clacu10g1415 Clacu-Chr10:27302698 Clacu11g1310 Clacu-Chr11:22301673 3.70E-60 dispersed
Clacu10g2232 Clacu-Chr10:35290419 Clacu11g1310 Clacu-Chr11:22301673 1.30E-64 dispersed
Clacu11g1310 Clacu-Chr11:22301673 Clacu11g1648 Clacu-Chr11:27621285 4.90E-42 dispersed
Clacu11g1310 Clacu-Chr11:22301673 Clacu01g2229 Clacu-Chr1:33489435 1.10E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73969 PF07714 PK_Tyr_Ser-Thr 2.90E-65 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1310 - - - 0.0