Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1310 | ATGTTGGAGGGTGGTCAAAAATTCACTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAGTCTCATACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGCCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACACTTGATTTAAGGAAGCTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACACTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAGTATGCGAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAAAGTCGTTCTGTCCCACTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCATAGGGACTTGAAATCGGACAACCTTTTGATTTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACCTCTATAGCTTTGGTATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCATTCCAGAATATGACAGCTGTTCAGGCCGCCTTTGCAGTCGTAAACAAAGGCGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTATTGAGCGACATCATGACCCGGTGCTGGGATGCCAACCCTGATGTTAGGCCGTCATTTACCGAGGTGGTCCGAATGCTTGAGAATGCGCAGACTGAGATCATGACGACAGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA | 1242 | 46.46 | MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 22301673 | 22309494 | + | ClG42_11g0131000.10 | Clacu11g1310 | 262187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1310 | 413 | Gene3D | Transferase(Phosphotransferase) domain 1 | 215 | 408 | - | - | |
Clacu11g1310 | 413 | FunFam | Serine/threonine-protein kinase isoform 1 | 122 | 214 | - | - | |
Clacu11g1310 | 413 | SMART | serkin_6 | 132 | 394 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1310 | 413 | Pfam | Protein tyrosine and serine/threonine kinase | 133 | 386 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1310 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 210 | 223 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1310 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 357 | 379 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1310 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 248 | 266 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1310 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 313 | 335 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1310 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 294 | 304 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1310 | 413 | ProSiteProfiles | Protein kinase domain profile. | 132 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1310 | 413 | CDD | STKc_MAP3K-like | 139 | 386 | - | - | |
Clacu11g1310 | 413 | Gene3D | Phosphorylase Kinase; domain 1 | 121 | 214 | - | - | |
Clacu11g1310 | 413 | FunFam | serine/threonine-protein kinase HT1 | 215 | 408 | - | - | |
Clacu11g1310 | 413 | SUPERFAMILY | Protein kinase-like (PK-like) | 117 | 386 | IPR011009 | - | |
Clacu11g1310 | 413 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 75 | 388 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Clacu11g1310 | 413 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 254 | 266 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2385 | Clacu-Chr1:34526617 | Clacu11g1310 | Clacu-Chr11:22301673 | 1.00E-78 | dispersed | |
Clacu03g0811 | Clacu-Chr3:9132426 | Clacu11g1310 | Clacu-Chr11:22301673 | 1.40E-72 | dispersed | |
Clacu06g1845 | Clacu-Chr6:28974531 | Clacu11g1310 | Clacu-Chr11:22301673 | 1.20E-61 | dispersed | |
Clacu10g0039 | Clacu-Chr10:798985 | Clacu11g1310 | Clacu-Chr11:22301673 | 2.70E-70 | dispersed | |
Clacu10g1415 | Clacu-Chr10:27302698 | Clacu11g1310 | Clacu-Chr11:22301673 | 3.70E-60 | dispersed | |
Clacu10g2232 | Clacu-Chr10:35290419 | Clacu11g1310 | Clacu-Chr11:22301673 | 1.30E-64 | dispersed | |
Clacu11g1310 | Clacu-Chr11:22301673 | Clacu11g1648 | Clacu-Chr11:27621285 | 4.90E-42 | dispersed | |
Clacu11g1310 | Clacu-Chr11:22301673 | Clacu01g2229 | Clacu-Chr1:33489435 | 1.10E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73969 | PF07714 | PK_Tyr_Ser-Thr | 2.90E-65 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1310 | - | - | - | 0.0 |