Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1317 ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCACAATCGTAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCGTTGAAGAATTTGGACGGTCAAGTTTGTGAGATCTGTGGCGACGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCCGTTTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAAAATTGTCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCGAGGGTTGAGGGAGATGACGATGAAGAAGACATAGATGACCTTGAACATGAGTTCAACATTGATGATGAGAGGAACAACCATAGTCATCTGGCAGAAGCTATGCTTCATGGCAAGATGAGCTACGGTAGAGGCCCAGATGATGAAGAAAATGCACAATACGGAAGAACACAGACAGCAAATGGTGAGCTTCCTTTATCTTCTCAAGGTTATGGAGAGCAGATGTTATCTTCTTCATTGCACAAACGTGTACATCCATATCCAGTTTCTGAACCAGGGAGTACAAGATGGGATGAAAAGAAAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGATTGATGCAGCCAGACAACCACTATCAAGGAAGGTACCAATAGCATCAAGCAAAATTAATCCGTACCGGATGGTTATTGTAGCCCGGCTCGTTATTCTCGCCTTCTTCCTTCGATACCGGATTCTAAATCCAGTGCATGACGCATTGGGCTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTCTCCCTAAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCGGTCGACATCTTTGTCAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGACAAGATTTCATGCTACGTTTCGGACGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCGAGGAAATGGGTGCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCGACATTTGTGAAAGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAGTTCCAGCAGAAGGATGGATAATGCAGGATGGAACACCGTGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTGGGTCACAGTGGAGGCCTCGATGCAGAAGGAAATGAACTCCCCCGCCTAGTTTATGTGTCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCTGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACGAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAAGCCATGTGCTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCTGTATATGTCGGCACAGGGTGTGTCTTTAGGAGGCAAGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGATTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTCAAGCACTCTAAAAGTGGGGTAGATGGAGATGTTGCAGTGCTGGAAGATGATAAGGAGCTACTGATGTCACAAATGAATTTTGAAAAGAAATTTGGACAGTCATCAATTTTTGTTACCTCTACTTTGATGGAAGAAGGTGGTGTTCCGCCCTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGA 2289 44.08 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDIDDLEHEFNIDDERNNHSHLAEAMLHGKMSYGRGPDDEENAQYGRTQTANGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGSTRWDEKKEEGWKDRMDDWKLQQGNLGPEPDDANDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKVPAEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKHSKSGVDGDVAVLEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTVYHATDKHFCKSLLHCLVSFHFCYGYS 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22466230 22470147 - ClG42_11g0131700.10 Clacu11g1317 262194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1317 762 CDD mRING-HC-C4C4_CesA 35 85 - -
Clacu11g1317 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Clacu11g1317 762 FunFam Cellulose synthase 19 110 - -
Clacu11g1317 762 FunFam Cellulose synthase 444 618 - -
Clacu11g1317 762 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 614 IPR029044 -
Clacu11g1317 762 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Clacu11g1317 762 SUPERFAMILY RING/U-box 21 109 - -
Clacu11g1317 762 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 432 618 IPR029044 -
Clacu11g1317 762 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 740 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Clacu11g1317 762 Pfam Cellulose synthase 327 742 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Clacu11g1317 762 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0147 Clacu-Chr6:1658296 Clacu11g1317 Clacu-Chr11:22466230 1.50E-182 dispersed
Clacu08g0218 Clacu-Chr8:4297411 Clacu11g1317 Clacu-Chr11:22466230 4.40E-293 dispersed
Clacu09g0412 Clacu-Chr9:3645744 Clacu11g1317 Clacu-Chr11:22466230 1.30E-261 dispersed
Clacu09g2162 Clacu-Chr9:36367050 Clacu11g1317 Clacu-Chr11:22466230 3.60E-80 dispersed
Clacu09g2163 Clacu-Chr9:36373922 Clacu11g1317 Clacu-Chr11:22466230 1.50E-70 dispersed
Clacu10g1113 Clacu-Chr10:23570112 Clacu11g1317 Clacu-Chr11:22466230 8.60E-104 dispersed
Clacu11g1317 Clacu-Chr11:22466230 Clacu02g0924 Clacu-Chr2:11765247 3.80E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1317 K10999 - csv:101214842 1504.58