Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1321 ATGGCAAAAGGAGGAGCTCAGAAGAAAGATGTGGCGGTGGCGATCGACAAAGACAAATGTAGTCAACAAGCTTTGAAATGGACAATCGAACGCCTTCTTAGCAGAGGCCAAGTGGTTACTCTGCTTCATGTTAAGCAGAAACCGTCTTCCTCTGCACATTCGATGACGAATATGAGTGCGGATTCGGATGTGGATGAGGCCGCTTTGTATAAACAACAGCTTGATAGTCATGCCAGAGATCAGTTCTTCCTCCCTTTTCGTTGCATTTGCACAAGAAACAATATACCATGCAATGAGGTGATGTTGGATGAAGGAGAGATTCCAAAGACATTAATAAATTATGTCTCCAAAAATGTTATAGACATTTTAGTACTTGGTGCCCCTACAAGATCAATTTACAAGAGATTCAAGTCAGATGTTCCAAGCAGTGTATCAAAAGGAGCACCAGACTTCTGCACTGTTTACACTATTGGCAACAAAGGCAAGGTTTCAGTGAGACAATCCACAGCTCCACCGCCAGCAAAGCCTGTTGCTCCGCCGCGCACCCAACTGCAGCCCGCCCCACCCCGCCCTCAGCTGCTACATCAGCTCACCAATGCCTCGGAAGTTGCGGCCGAGCCGAACCAGCCACGCTCCCAAGCAGCTAAATCTTTAGATACTCAAAACAGCATAAATACTCCTCCTCGTGCCGTTCAAGAAGATTGGGACATCAAATCACCATTTACAAGGCCTGGTTCAAGGGCTTCAATGAGCAAAGTGATGGAACCATTGACGGCGGATTCCGACATATCGTATGTCAGCAGCGGGAGGCGGAGCATGGACCGTGGCTTCCAAGGGGCATGGAACTCCAGCACTTGCACCGACTCGTATCGCCTTTCTAACGTCTCTGAGTTTGAAGTTTCCAGCCCCAGTCCGGCTTCGCCTATGCTGGAAATGGGAGGAGGAACCAACAAATCATCCATTGATAATACTATCAATGATGATGATAATAATAACAACAACAATAGCAATGTCTCTTCTTACCCTCAAGATATGTCATTTTGCTCTTTACAAAGTGAAACATTCTCTTGGCCTTCCAATTCTCACGCTCAGGATGATGTTGAAGCTGAGATGAGAAGACTGAAATTAGAGCTCAAACAAACCATGGACATGTACAGTACGGCCTGCAAAGAAGCCCTAAACGCCAAGCAGAAGGCGATGGAGCTCCATCGCTGGAAAGTGGAAGAAGAGCAAAGGTTAGAAGAGGCGAGAATGGGGGGGGAAGCAGCATTAGCAATGGCGGAGAAGGAGAAGATGAAATGCAAAGCAGCGATGGAGGCAGCTGAAGCTGCACAAAAGATCGCAGTACTTGAGGCGAGGAAAAGAGCGAACGCGGAGAAAATGGTGGACATGGAAGCACAAGAAACGAAAAGAACACTTTCGCTTTCAGGATTCGGCCATGGAGAAATCGGTTACAGAAGGTACACAATCCAGGAAATCGAAACTGCCACGAAAGGCTTTTCTGATTCTCTAAAGATCGGTGAAGGCGGTTACGGTCCAGTCTTCCGTGGAGAACTTGACCACACACCGGTGGCAATCAAGGTTCTCCGGCCGGATGCTGCTCACGGACGATCACAATTTCAGCAAGAGGTTGAAGTTCTAAGTTGTATTCGTCATCCAAACATGGTTCTCCTTCTTGGAGCGTGTCCTGAAAACGGTTGTTTAGTTTACGAATTCATGGCGAATGGAAGCTTAGAAGACTGTCTCTTTCGAAAAGCGAATGATCCAATTCTTTCATGGCAGTTACGATTCCGAATCGCGGCGGAGATCGCTACCGGACTTCTCTTCCTACACCAGGCCAGACCAGAACCGATTGTACACCGCGATCTGAAACCGGGGAACATTTTGCTAGATAGGAACTACGTGAGCAAAATCAGTGACGTCGGACTGGCGAGGCTGGTTCCTCCATCAGTGGCCGATTCAGTGACTCAATATCGGATGACAGCAACGGCAGGGACATTCTTCTACATCGATCCAGAGTATCAGCAAACAGGATTGCTAGGGATTAAATCGGACATTTACTCGTTGGGCGTGATGCTTCTGCAAATAATCACAGCCAGGCCCCCAATCGGACTGGCGCACGCTGTCGAAAGGGCGATTGAGAAGGGGACATTTGCAGAGATGCTTGATCCAGATGTGAAGGACTGGCCGGTTGAAGACGCGTTGAAGTTTGCGAAACTTTCAATTAAGTGCGCAGAAATGAGGAAGAGAGATCGACCAGATCTTGGGAAGGTGGTGCTGCCGGAGCTTAATCGGTTGAGAACAATGGCGGAGGAGAGTATGGGACTTCGGTCGTTCAACGGTGGTAGTACGTGTTCATCGCCATATGCAAGCCAAACTTCTCAGGAAATGATAAGTAGTGTAAATCTGGAGCATTGTGGAGCATGGGTTGAGAGCTCAAGCAGCCAATCAGATAGCAGCATGTCATCATACTCAGGCAAAATACCTTATTGGCTGGACTAG 2502 47.96 MAKGGAQKKDVAVAIDKDKCSQQALKWTIERLLSRGQVVTLLHVKQKPSSSAHSMTNMSADSDVDEAALYKQQLDSHARDQFFLPFRCICTRNNIPCNEVMLDEGEIPKTLINYVSKNVIDILVLGAPTRSIYKRFKSDVPSSVSKGAPDFCTVYTIGNKGKVSVRQSTAPPPAKPVAPPRTQLQPAPPRPQLLHQLTNASEVAAEPNQPRSQAAKSLDTQNSINTPPRAVQEDWDIKSPFTRPGSRASMSKVMEPLTADSDISYVSSGRRSMDRGFQGAWNSSTCTDSYRLSNVSEFEVSSPSPASPMLEMGGGTNKSSIDNTINDDDNNNNNNSNVSSYPQDMSFCSLQSETFSWPSNSHAQDDVEAEMRRLKLELKQTMDMYSTACKEALNAKQKAMELHRWKVEEEQRLEEARMGGEAALAMAEKEKMKCKAAMEAAEAAQKIAVLEARKRANAEKMVDMEAQETKRTLSLSGFGHGEIGYRRYTIQEIETATKGFSDSLKIGEGGYGPVFRGELDHTPVAIKVLRPDAAHGRSQFQQEVEVLSCIRHPNMVLLLGACPENGCLVYEFMANGSLEDCLFRKANDPILSWQLRFRIAAEIATGLLFLHQARPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDIYSLGVMLLQIITARPPIGLAHAVERAIEKGTFAEMLDPDVKDWPVEDALKFAKLSIKCAEMRKRDRPDLGKVVLPELNRLRTMAEESMGLRSFNGGSTCSSPYASQTSQEMISSVNLEHCGAWVESSSSQSDSSMSSYSGKIPYWLD 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22504247 22511429 + ClG42_11g0132100.10 Clacu11g1321 262198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1321 833 Coils Coil 364 384 - -
Clacu11g1321 833 Gene3D Phosphorylase Kinase; domain 1 482 572 - -
Clacu11g1321 833 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 478 572 - -
Clacu11g1321 833 MobiDBLite consensus disorder prediction 192 229 - -
Clacu11g1321 833 MobiDBLite consensus disorder prediction 172 187 - -
Clacu11g1321 833 SUPERFAMILY Protein kinase-like (PK-like) 479 759 IPR011009 -
Clacu11g1321 833 Gene3D HUPs 9 157 IPR014729 -
Clacu11g1321 833 ProSiteProfiles Protein kinase domain profile. 500 763 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1321 833 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 137 - -
Clacu11g1321 833 CDD STK_N 11 161 - -
Clacu11g1321 833 Pfam Universal stress protein family 10 136 IPR006016 -
Clacu11g1321 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1321 833 FunFam U-box domain-containing protein 51 573 773 - -
Clacu11g1321 833 Pfam Protein kinase domain 503 754 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1321 833 Gene3D Transferase(Phosphotransferase) domain 1 573 778 - -
Clacu11g1321 833 Coils Coil 424 444 - -
Clacu11g1321 833 SMART serkin_6 500 763 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1321 833 MobiDBLite consensus disorder prediction 163 232 - -
Clacu11g1321 833 PANTHER OS02G0152300 PROTEIN 11 796 IPR051348 -
Clacu11g1321 833 MobiDBLite consensus disorder prediction 313 342 - -
Clacu11g1321 833 MobiDBLite consensus disorder prediction 300 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1410 Clacu-Chr8:24185947 Clacu11g1321 Clacu-Chr11:22504247 9.20E-215 dispersed
Clacu09g0085 Clacu-Chr9:773867 Clacu11g1321 Clacu-Chr11:22504247 5.40E-154 dispersed
Clacu11g0311 Clacu-Chr11:2797434 Clacu11g1321 Clacu-Chr11:22504247 4.00E-103 dispersed
Clacu11g1321 Clacu-Chr11:22504247 Clacu03g0003 Clacu-Chr3:258187 1.20E-50 dispersed
Clacu11g1321 Clacu-Chr11:22504247 Clacu08g1155 Clacu-Chr8:21603546 8.90E-184 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73971 PF00069 Pkinase 5.30E-37 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1321 - - - 0.0