Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1330 ATGGCTTTCTTTGCTACAAAGTCTAGTGTTTTCTTTTCTCTCTTTTCAGTACTTGTTGTTTCTCTTGTTACTAAGTTCATATTCCCCATGTCTCCACTTGCTTTCGGAGTCACAATCTTCATTGTTCCTCTCTTTACTTATATCATCTCTTCCATGGCCTTCTCCTCCAAGCTTCCTCCTGGCCCTCTCTCCATTCCCATCTTTGGCAATTGGCTCCAAGTTGGCAATGATCTCAACCATCGCCTTCTTGCTTCCTTGTGCAAGAGATTTGGCTCCATATTCCTCTTAAAACTCGGCTCCAAGAACCTCGTTGTTGTGTCTGATGCCGAGCTTGCTAGCCAAGTTCTCCATGCTCAAGGCGTCGAGTTTGGCTCTCGCCCTCGAAATGTCGTGTTTGATATCTTCACTGGAAATGGTCAAGATATGGTGTTTACCGTTTATGGAGACCATTGGCGTAAGATGCGTAGAATCATGACATTGCCGTTTTTCACAAACAAAGTGGTGCACAACTACAGTGACATGTGGGAAGATGAGATGGACTCTGTGGTTCGTGACCTTAAGAGTAACAAGAAGTTTCAATCAGAAGGGATAGTCATTAGAAAGCGTTTGCAATTGATGTTGTACAATATCATGTATAGAATGATGTTTGATGCAAAGTTTGAGTCCCAAGACGATCCTTTGTTCATTGAAGCAACCCGATTCAACTCAGAAAGGAGTCGATTGGCACAAAGCTTTGAGTACAACTATGGAGATTTCATTCCTTTGCTCAGACCCTTCTTGCGAGGTTACTTGAACAAGTGTAGAGGTTTGCAGAGTAGGAGGTTGAACTTTTTCAACAAAAACTATGTTGAGAAAAGAAGGAAGATAATGGCTGCGAATGGAGATAAGCACAAGATAAGTTGTGCCATGGATCATATTATAGACGCTCAATTGAAAGGTGAGATAAGTGAAGAGAATGTGATTTACATCGTGGAGAACATCAACGTGGCTGCTATCGAAACGACATTGTGGTCGATGGAATGGGCGATAGCTGAGCTGGTGAATCATCCAGAAATCCAACACAAGATTCGGGAGGAGATTAGTGATGTCCTAAAAGGAAAGGAAGTGACTGAATCTAACCTTCATGAACTACCATACTTGCAAGCAACAGTAAAAGAAACACTAAGGTTGCACACTCCAATTCCATTGTTGGTGCCACATATGAACTTGGAAGAGGCAAAGCTCGGAGGGTACACCATTCCAAAGGAATCTAAGGTGGTAGTGAATGCATGGTGGCTGGCTAATAACCCTGAGTGGTGGAAAAATCCAGAGGAGTTTAGGCCAGAGAGGTTCTTTGAAGAAGAAAGTGGAACAGAGGCTGTTGCTGCAGGAAAAGTGGATTATCGATTCTTACCATTTGGAGTTGGAAGAAGGAGTTGCCCTGGAATTGTTTTGGCAATGCCAATCTTAGGACTCATTGTGGCCAAGTTGGTTTCAAAGTTTGAAATGAAACCTCCTAATGGATTGGAGAAGATTGATGTCGCAGAAAAAGGAGGACAATTCAGCCTGCATATCGCCAACCACTCAACGGTTGTTTTTGACCCCATTACTGCTTAA 1596 42.86 MAFFATKSSVFFSLFSVLVVSLVTKFIFPMSPLAFGVTIFIVPLFTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASLCKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSDMWEDEMDSVVRDLKSNKKFQSEGIVIRKRLQLMLYNIMYRMMFDAKFESQDDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCRGLQSRRLNFFNKNYVEKRRKIMAANGDKHKISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEIQHKIREEISDVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGTEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPNGLEKIDVAEKGGQFSLHIANHSTVVFDPITA 531
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 22661907 22663594 + ClG42_11g0133000.10 Clacu11g1330 262207
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1330 531 FunFam Trans-cinnamate 4-monooxygenase 49 523 - -
Clacu11g1330 531 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS E-class P450 group I signature 206 224 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 39 530 - GO:0004497(PANTHER)
Clacu11g1330 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Clacu11g1330 531 Pfam Cytochrome P450 59 520 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 SUPERFAMILY Cytochrome P450 59 511 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu11g1330 531 Gene3D Cytochrome P450 53 525 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1330 Clacu-Chr11:22661907 Clacu11g1332 Clacu-Chr11:22678922 1.60E-255 dispersed
Clacu11g1330 Clacu-Chr11:22661907 Clacu11g1331 Clacu-Chr11:22671405 1.50E-72 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1330 K00487 - csv:101204747 999.964