Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1343 | ATGTATGTGAAGAGAGGGATCGAATTTCCGAGATTGAGATCGATAAGATTTTTTTCGACTATGCCATCGCTTAAGGGCTCTCCGTACGCTAGACGGAGTGATGTGGAGTCCGGTAGCAGCAATTCCGGCGACGCGGAGGAGGAGGATTTATCTAATCCTTTTGAAATTCACACCACTAAGCATGCTTCTGTTGACAGACTCCGCCGCTGGAGACAAGCTGCGCTAGTGTTAAATGCTTCTCGTCGTTTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCGTATCTCTTTAAAGAGGCTGGGGATCGTGTAACAGGACCAGGGCCTGCAGCAGCAGAAGCTCCAAATGGTGATTTTTCAGTTGGACCAGAGCAACTGGCTGTGTTGGTTAAGGATCGTAATGTTGAAGCTCTGGAGCAGTATGGAGGGGTTAAAGGGGTAGCAGATATGTTACAATCAAATTTAGAGAAGGGGATAATTGGTGATGATTCTGATTTATTGAAACGGAGAAACACATATGGTTCAAACACATATCCCCAGAAACCGGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCTGCTGTTGCTTCGTTGGTGCTAGGCATAAAGACTGAGGGAATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTCGTAACAGCTATTAGTGACTATCGACAATCTCTTCAATTTCAGAACTTGAATAAGGAGAAGAGGAACATACAAGTGGAGGTCGTTAGGGGTGGCCGTCGAATTGAGGTCTCAATTTATGACATCGTTGTTGGTGATGTTATACCGCTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCCTAATTTCTGGACACTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGGTAAGGAACCATTCCTGATGTCTGGATGCAAAGTAGCTGATGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCTTTTGCTGTCTTGATTGTGCTCCTTACAAGGTATTTCACTGGTCACACCAAAAATCCAGATGGAAGCCGTCAGTTTATTCCAGGCCAGACAAAAGTTGGTCGTGCCGTTGACGGGGCCATCAAAATTGTCACTATTGCGGTGACCATTGTTGTGGTTGCTGTGCCAGAAGGGCTTCCACTAGCTGTAACCTTAACTCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTTTAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGAAAGAAGATTGATCCGCCAGAGAAGAAGTCAGAGTTGTCTCCTATGTTACACTCTACACTTATTGAAGGCATTGCTCTAAACTCAAATGGCAGTGTATATATGCCTGAGAGTGGTGGAGAGGTGGAGGTTACAGGATCACCAACAGAGAAGGCTATTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCACTTCGATCAGAATCTGCAATTCTTCACGTCTTCCCCTTCAGCTCAGATAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATGATCAAGTCCGTGTACACTGGAAAGGTGCTGCTGAGATAGTCTTAGCATCGTGCACACAGTATATGGATGAACATGATCAATCTGTTCAATTAGATGAAGATAAGATGAAGTATTTTAAAAGGGCTATCGAAGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCATATAGACCTGTTGAACCTGAGAATGTTCCTGATGGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTGTTGTTGGCTATAGTTGGTTTGAAGGACCCCTGCCGACCAGGAGTGAAAGATGCAGTACGACTTTGCCAAAAGGCTGGTGTTAAGGTGCGCATGGTCACTGGTGATAATGTTCAAACTGCTAGAGCTATTGCATTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGTATTCCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTGATGGGCCGATCCTCCCCCAATGATAAGCTTCTCCTTGTGCAAGCGTTGAGAAAGAAAGGACATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTGCATGAGGCAGATATTGGCCTTGCAATGGGAATTCAGGGGACAGAAGTTGCCAAAGAAAGCTCCGATATTATTATTTTAGATGACAACTTTGCTTCTGTTGTGAAGGTTGTAAGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATTCAGTTTCAGCTTACTGTTAATGTTGCAGCACTCATTATAAATGTCGTGGCAGCAGTATCCTCTGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATCATGGACACTCTCGGAGCATTAGCTTTGGCTACTGAACCACCAACCAATCACCTTATGGACAGATCGCCAGTTGGTAGAAGAGAACCTCTCATAACAAATATTATGTGGAGGAACCTCCTGATACAGGCATTTTATCAAGTCACTGTGTTGCTCGTCCTCAATTTTCGTGGTCGGAGTTTGCTTCATTTGAACCACTCTAATTTAGAAGCTATCAAAGTGAAGAATACATTGATTTTCAATGCATTTGTACTTTGTCAAATTTTCAATGAGTTTAATGCTCGAAAACCTGATGAGAAGAATATATTCAAAGGAGTCACTAAAAATTATCTCTTCATCGGGATCATTGCAATTACTGTCATCCTCCAGGTGATAATAATTGAGTTTCTTGGGAAATTCACATCCACGGTAAGGCTAAATTGGAAATATTGGATTATTTCCATAATCATTGGCGTTATCAGTTGGCCTCTTGCTCTTCTTGGGAAATTCATACCTGTTCCTGAAACTCCCTTCCATGTGCTCATTATCAGAATGTTCCGTAAACGACAACCTGGGGGAGTTTTTAGGACCCTGAGCAACACTCACCTTGACGCTGAGATGGCATATTGTGGGAATTGTTTTTTTGTGCTTCTAAAGGGCAATCGTTCTGAGGGATCGTAA | 3378 | 43.07 | MYVKRGIEFPRLRSIRFFSTMPSLKGSPYARRSDVESGSSNSGDAEEEDLSNPFEIHTTKHASVDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKEAGDRVTGPGPAAAEAPNGDFSVGPEQLAVLVKDRNVEALEQYGGVKGVADMLQSNLEKGIIGDDSDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHGKEPFLMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLIVLLTRYFTGHTKNPDGSRQFIPGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTIVEAYAGGKKIDPPEKKSELSPMLHSTLIEGIALNSNGSVYMPESGGEVEVTGSPTEKAILNWGIKLGMNFEALRSESAILHVFPFSSDKKRGGVAGQRDDQVRVHWKGAAEIVLASCTQYMDEHDQSVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRPVEPENVPDGEEQLSKWALPEDDLVLLAIVGLKDPCRPGVKDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKVFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSNLEAIKVKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVILQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALLGKFIPVPETPFHVLIIRMFRKRQPGGVFRTLSNTHLDAEMAYCGNCFFVLLKGNRSEGS | 1125 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23006038 | 23027027 | - | ClG42_11g0134300.10 | Clacu11g1343 | 262220 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1343 | 1125 | FunFam | Calcium-transporting ATPase | 257 | 378 | - | - | |
Clacu11g1343 | 1125 | SFLD | Haloacid Dehalogenase | 484 | 861 | - | - | |
Clacu11g1343 | 1125 | CDD | P-type_ATPase_Ca_PMCA-like | 184 | 942 | - | - | |
Clacu11g1343 | 1125 | SMART | Cation_ATPase_N_a_2 | 158 | 232 | IPR004014 | - | |
Clacu11g1343 | 1125 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 504 | 510 | IPR018303 | - | |
Clacu11g1343 | 1125 | Pfam | haloacid dehalogenase-like hydrolase | 500 | 823 | - | - | |
Clacu11g1343 | 1125 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 509 | 706 | IPR023299 | GO:0000166(InterPro) | |
Clacu11g1343 | 1125 | PRINTS | Sodium/potassium-transporting ATPase signature | 495 | 516 | - | - | |
Clacu11g1343 | 1125 | PRINTS | Sodium/potassium-transporting ATPase signature | 245 | 265 | - | - | |
Clacu11g1343 | 1125 | PRINTS | Sodium/potassium-transporting ATPase signature | 620 | 638 | - | - | |
Clacu11g1343 | 1125 | MobiDBLite | consensus disorder prediction | 33 | 47 | - | - | |
Clacu11g1343 | 1125 | Pfam | E1-E2 ATPase | 279 | 480 | - | - | |
Clacu11g1343 | 1125 | SUPERFAMILY | HAD-like | 500 | 914 | IPR036412 | - | |
Clacu11g1343 | 1125 | FunFam | Calcium-transporting ATPase | 703 | 854 | - | - | |
Clacu11g1343 | 1125 | FunFam | Calcium-transporting ATPase | 512 | 709 | - | - | |
Clacu11g1343 | 1125 | Coils | Coil | 89 | 109 | - | - | |
Clacu11g1343 | 1125 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 51 | 94 | IPR024750 | GO:0005516(InterPro) | |
Clacu11g1343 | 1125 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 356 | 526 | - | - | |
Clacu11g1343 | 1125 | Gene3D | - | 512 | 709 | IPR023299 | GO:0000166(InterPro) | |
Clacu11g1343 | 1125 | Gene3D | - | 184 | 378 | - | - | |
Clacu11g1343 | 1125 | Gene3D | - | 210 | 1061 | - | - | |
Clacu11g1343 | 1125 | Gene3D | - | 62 | 118 | - | - | |
Clacu11g1343 | 1125 | Pfam | Cation transporting ATPase, C-terminus | 894 | 1070 | IPR006068 | - | |
Clacu11g1343 | 1125 | Pfam | Cation transporter/ATPase, N-terminus | 159 | 227 | IPR004014 | - | |
Clacu11g1343 | 1125 | PANTHER | CATION TRANSPORTING ATPASE | 111 | 1072 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
Clacu11g1343 | 1125 | Gene3D | - | 499 | 854 | IPR023214 | - | |
Clacu11g1343 | 1125 | NCBIfam | HAD-IC family P-type ATPase | 442 | 525 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Clacu11g1343 | 1125 | NCBIfam | HAD-IC family P-type ATPase | 247 | 419 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Clacu11g1343 | 1125 | NCBIfam | HAD-IC family P-type ATPase | 776 | 889 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Clacu11g1343 | 1125 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 159 | 1072 | IPR023298 | - | |
Clacu11g1343 | 1125 | MobiDBLite | consensus disorder prediction | 25 | 56 | - | - | |
Clacu11g1343 | 1125 | SUPERFAMILY | Calcium ATPase, transduction domain A | 279 | 375 | IPR008250 | - | |
Clacu11g1343 | 1125 | FunFam | Calcium-transporting ATPase | 210 | 267 | - | - | |
Clacu11g1343 | 1125 | PRINTS | P-type cation-transporting ATPase superfamily signature | 724 | 734 | - | - | |
Clacu11g1343 | 1125 | PRINTS | P-type cation-transporting ATPase superfamily signature | 833 | 845 | - | - | |
Clacu11g1343 | 1125 | PRINTS | P-type cation-transporting ATPase superfamily signature | 502 | 516 | - | - | |
Clacu11g1343 | 1125 | PRINTS | P-type cation-transporting ATPase superfamily signature | 809 | 828 | - | - | |
Clacu11g1343 | 1125 | PRINTS | P-type cation-transporting ATPase superfamily signature | 702 | 713 | - | - | |
Clacu11g1343 | 1125 | PRINTS | P-type cation-transporting ATPase superfamily signature | 326 | 340 | - | - | |
Clacu11g1343 | 1125 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 152 | 1072 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
Clacu11g1343 | 1125 | SFLD | p-type atpase | 484 | 861 | IPR044492 | - | |
Clacu11g1343 | 1125 | FunFam | Calcium-transporting ATPase | 62 | 118 | - | - | |
Clacu11g1343 | 1125 | FunFam | Calcium-transporting ATPase | 826 | 1074 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g0182 | Clacu-Chr3:2005338 | Clacu11g1343 | Clacu-Chr11:23006038 | 2.50E-98 | dispersed | |
Clacu09g0159 | Clacu-Chr9:1502362 | Clacu11g1343 | Clacu-Chr11:23006038 | 0.00E+00 | dispersed | |
Clacu09g0737 | Clacu-Chr9:6501679 | Clacu11g1343 | Clacu-Chr11:23006038 | 4.60E-291 | dispersed | |
Clacu10g1556 | Clacu-Chr10:28819254 | Clacu11g1343 | Clacu-Chr11:23006038 | 1.50E-265 | dispersed | |
Clacu11g1343 | Clacu-Chr11:23006038 | Clacu11g1388 | Clacu-Chr11:24399862 | 4.60E-42 | dispersed | |
Clacu11g1343 | Clacu-Chr11:23006038 | Clacu05g2255 | Clacu-Chr5:30965133 | 8.50E-254 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1343 | K01537 | - | csv:101211703 | 1938.7 |