Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1343 ATGTATGTGAAGAGAGGGATCGAATTTCCGAGATTGAGATCGATAAGATTTTTTTCGACTATGCCATCGCTTAAGGGCTCTCCGTACGCTAGACGGAGTGATGTGGAGTCCGGTAGCAGCAATTCCGGCGACGCGGAGGAGGAGGATTTATCTAATCCTTTTGAAATTCACACCACTAAGCATGCTTCTGTTGACAGACTCCGCCGCTGGAGACAAGCTGCGCTAGTGTTAAATGCTTCTCGTCGTTTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCGTATCTCTTTAAAGAGGCTGGGGATCGTGTAACAGGACCAGGGCCTGCAGCAGCAGAAGCTCCAAATGGTGATTTTTCAGTTGGACCAGAGCAACTGGCTGTGTTGGTTAAGGATCGTAATGTTGAAGCTCTGGAGCAGTATGGAGGGGTTAAAGGGGTAGCAGATATGTTACAATCAAATTTAGAGAAGGGGATAATTGGTGATGATTCTGATTTATTGAAACGGAGAAACACATATGGTTCAAACACATATCCCCAGAAACCGGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCTGCTGTTGCTTCGTTGGTGCTAGGCATAAAGACTGAGGGAATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTCGTAACAGCTATTAGTGACTATCGACAATCTCTTCAATTTCAGAACTTGAATAAGGAGAAGAGGAACATACAAGTGGAGGTCGTTAGGGGTGGCCGTCGAATTGAGGTCTCAATTTATGACATCGTTGTTGGTGATGTTATACCGCTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCCTAATTTCTGGACACTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGGTAAGGAACCATTCCTGATGTCTGGATGCAAAGTAGCTGATGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCTTTTGCTGTCTTGATTGTGCTCCTTACAAGGTATTTCACTGGTCACACCAAAAATCCAGATGGAAGCCGTCAGTTTATTCCAGGCCAGACAAAAGTTGGTCGTGCCGTTGACGGGGCCATCAAAATTGTCACTATTGCGGTGACCATTGTTGTGGTTGCTGTGCCAGAAGGGCTTCCACTAGCTGTAACCTTAACTCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTTTAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGAAAGAAGATTGATCCGCCAGAGAAGAAGTCAGAGTTGTCTCCTATGTTACACTCTACACTTATTGAAGGCATTGCTCTAAACTCAAATGGCAGTGTATATATGCCTGAGAGTGGTGGAGAGGTGGAGGTTACAGGATCACCAACAGAGAAGGCTATTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCACTTCGATCAGAATCTGCAATTCTTCACGTCTTCCCCTTCAGCTCAGATAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATGATCAAGTCCGTGTACACTGGAAAGGTGCTGCTGAGATAGTCTTAGCATCGTGCACACAGTATATGGATGAACATGATCAATCTGTTCAATTAGATGAAGATAAGATGAAGTATTTTAAAAGGGCTATCGAAGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCATATAGACCTGTTGAACCTGAGAATGTTCCTGATGGCGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTGTTGTTGGCTATAGTTGGTTTGAAGGACCCCTGCCGACCAGGAGTGAAAGATGCAGTACGACTTTGCCAAAAGGCTGGTGTTAAGGTGCGCATGGTCACTGGTGATAATGTTCAAACTGCTAGAGCTATTGCATTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGTATTCCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTGATGGGCCGATCCTCCCCCAATGATAAGCTTCTCCTTGTGCAAGCGTTGAGAAAGAAAGGACATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTGCATGAGGCAGATATTGGCCTTGCAATGGGAATTCAGGGGACAGAAGTTGCCAAAGAAAGCTCCGATATTATTATTTTAGATGACAACTTTGCTTCTGTTGTGAAGGTTGTAAGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATTCAGTTTCAGCTTACTGTTAATGTTGCAGCACTCATTATAAATGTCGTGGCAGCAGTATCCTCTGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATCATGGACACTCTCGGAGCATTAGCTTTGGCTACTGAACCACCAACCAATCACCTTATGGACAGATCGCCAGTTGGTAGAAGAGAACCTCTCATAACAAATATTATGTGGAGGAACCTCCTGATACAGGCATTTTATCAAGTCACTGTGTTGCTCGTCCTCAATTTTCGTGGTCGGAGTTTGCTTCATTTGAACCACTCTAATTTAGAAGCTATCAAAGTGAAGAATACATTGATTTTCAATGCATTTGTACTTTGTCAAATTTTCAATGAGTTTAATGCTCGAAAACCTGATGAGAAGAATATATTCAAAGGAGTCACTAAAAATTATCTCTTCATCGGGATCATTGCAATTACTGTCATCCTCCAGGTGATAATAATTGAGTTTCTTGGGAAATTCACATCCACGGTAAGGCTAAATTGGAAATATTGGATTATTTCCATAATCATTGGCGTTATCAGTTGGCCTCTTGCTCTTCTTGGGAAATTCATACCTGTTCCTGAAACTCCCTTCCATGTGCTCATTATCAGAATGTTCCGTAAACGACAACCTGGGGGAGTTTTTAGGACCCTGAGCAACACTCACCTTGACGCTGAGATGGCATATTGTGGGAATTGTTTTTTTGTGCTTCTAAAGGGCAATCGTTCTGAGGGATCGTAA 3378 43.07 MYVKRGIEFPRLRSIRFFSTMPSLKGSPYARRSDVESGSSNSGDAEEEDLSNPFEIHTTKHASVDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKEAGDRVTGPGPAAAEAPNGDFSVGPEQLAVLVKDRNVEALEQYGGVKGVADMLQSNLEKGIIGDDSDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHGKEPFLMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLIVLLTRYFTGHTKNPDGSRQFIPGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTIVEAYAGGKKIDPPEKKSELSPMLHSTLIEGIALNSNGSVYMPESGGEVEVTGSPTEKAILNWGIKLGMNFEALRSESAILHVFPFSSDKKRGGVAGQRDDQVRVHWKGAAEIVLASCTQYMDEHDQSVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRPVEPENVPDGEEQLSKWALPEDDLVLLAIVGLKDPCRPGVKDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKVFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVTVLLVLNFRGRSLLHLNHSNLEAIKVKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVILQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALLGKFIPVPETPFHVLIIRMFRKRQPGGVFRTLSNTHLDAEMAYCGNCFFVLLKGNRSEGS 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23006038 23027027 - ClG42_11g0134300.10 Clacu11g1343 262220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1343 1125 FunFam Calcium-transporting ATPase 257 378 - -
Clacu11g1343 1125 SFLD Haloacid Dehalogenase 484 861 - -
Clacu11g1343 1125 CDD P-type_ATPase_Ca_PMCA-like 184 942 - -
Clacu11g1343 1125 SMART Cation_ATPase_N_a_2 158 232 IPR004014 -
Clacu11g1343 1125 ProSitePatterns E1-E2 ATPases phosphorylation site. 504 510 IPR018303 -
Clacu11g1343 1125 Pfam haloacid dehalogenase-like hydrolase 500 823 - -
Clacu11g1343 1125 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 509 706 IPR023299 GO:0000166(InterPro)
Clacu11g1343 1125 PRINTS Sodium/potassium-transporting ATPase signature 495 516 - -
Clacu11g1343 1125 PRINTS Sodium/potassium-transporting ATPase signature 245 265 - -
Clacu11g1343 1125 PRINTS Sodium/potassium-transporting ATPase signature 620 638 - -
Clacu11g1343 1125 MobiDBLite consensus disorder prediction 33 47 - -
Clacu11g1343 1125 Pfam E1-E2 ATPase 279 480 - -
Clacu11g1343 1125 SUPERFAMILY HAD-like 500 914 IPR036412 -
Clacu11g1343 1125 FunFam Calcium-transporting ATPase 703 854 - -
Clacu11g1343 1125 FunFam Calcium-transporting ATPase 512 709 - -
Clacu11g1343 1125 Coils Coil 89 109 - -
Clacu11g1343 1125 Pfam Ca2+-ATPase N terminal autoinhibitory domain 51 94 IPR024750 GO:0005516(InterPro)
Clacu11g1343 1125 FunFam Calcium-transporting ATPase 9 plasma membrane-type 356 526 - -
Clacu11g1343 1125 Gene3D - 512 709 IPR023299 GO:0000166(InterPro)
Clacu11g1343 1125 Gene3D - 184 378 - -
Clacu11g1343 1125 Gene3D - 210 1061 - -
Clacu11g1343 1125 Gene3D - 62 118 - -
Clacu11g1343 1125 Pfam Cation transporting ATPase, C-terminus 894 1070 IPR006068 -
Clacu11g1343 1125 Pfam Cation transporter/ATPase, N-terminus 159 227 IPR004014 -
Clacu11g1343 1125 PANTHER CATION TRANSPORTING ATPASE 111 1072 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Clacu11g1343 1125 Gene3D - 499 854 IPR023214 -
Clacu11g1343 1125 NCBIfam HAD-IC family P-type ATPase 442 525 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g1343 1125 NCBIfam HAD-IC family P-type ATPase 247 419 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g1343 1125 NCBIfam HAD-IC family P-type ATPase 776 889 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g1343 1125 SUPERFAMILY Calcium ATPase, transmembrane domain M 159 1072 IPR023298 -
Clacu11g1343 1125 MobiDBLite consensus disorder prediction 25 56 - -
Clacu11g1343 1125 SUPERFAMILY Calcium ATPase, transduction domain A 279 375 IPR008250 -
Clacu11g1343 1125 FunFam Calcium-transporting ATPase 210 267 - -
Clacu11g1343 1125 PRINTS P-type cation-transporting ATPase superfamily signature 724 734 - -
Clacu11g1343 1125 PRINTS P-type cation-transporting ATPase superfamily signature 833 845 - -
Clacu11g1343 1125 PRINTS P-type cation-transporting ATPase superfamily signature 502 516 - -
Clacu11g1343 1125 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Clacu11g1343 1125 PRINTS P-type cation-transporting ATPase superfamily signature 702 713 - -
Clacu11g1343 1125 PRINTS P-type cation-transporting ATPase superfamily signature 326 340 - -
Clacu11g1343 1125 NCBIfam calcium-translocating P-type ATPase, PMCA-type 152 1072 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Clacu11g1343 1125 SFLD p-type atpase 484 861 IPR044492 -
Clacu11g1343 1125 FunFam Calcium-transporting ATPase 62 118 - -
Clacu11g1343 1125 FunFam Calcium-transporting ATPase 826 1074 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0182 Clacu-Chr3:2005338 Clacu11g1343 Clacu-Chr11:23006038 2.50E-98 dispersed
Clacu09g0159 Clacu-Chr9:1502362 Clacu11g1343 Clacu-Chr11:23006038 0.00E+00 dispersed
Clacu09g0737 Clacu-Chr9:6501679 Clacu11g1343 Clacu-Chr11:23006038 4.60E-291 dispersed
Clacu10g1556 Clacu-Chr10:28819254 Clacu11g1343 Clacu-Chr11:23006038 1.50E-265 dispersed
Clacu11g1343 Clacu-Chr11:23006038 Clacu11g1388 Clacu-Chr11:24399862 4.60E-42 dispersed
Clacu11g1343 Clacu-Chr11:23006038 Clacu05g2255 Clacu-Chr5:30965133 8.50E-254 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1343 K01537 - csv:101211703 1938.7