Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1352 | ATGGATCCCCCAACCTCCAACCGTAGTCGTAGAACTACCAACAAATCTGATCTCTACTCCACCGTTGTCATCCATTCCAATTCTGATTCCGACTCCGATAACAATCCCGACGATCGGAATCTTCACCGTCGACGAAGGCCGCCGAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGTGACGACGATGATGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGCGGAGCTCCAATTGACTACGAGGATGACCATGCTTTTGATTTCGATCACGATACCGAAGACTTCGGTACCATGTTCGTCAAGACGGATAGGAATCGTCCTCGAAATCGCTCTGTGTCTTCATCAGTTTCGACCATGCCCCGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGGGTATTCTACGTTTGTGGTGAGGTCCACGGCCAGGTCGCGGAACAGGGAATCGGTTAGTGGGACTGTTGTTCGAAGGACCGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGAGGGGTCCACGATGGGCAGAGCGGTCGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACGGAGGAGTGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCGAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTCTCTGCTATTGAAATGGCCGAGGGGCTTCCTCCAAGATCGGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGCTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGGGAAATGCAGATGTGGGGCATCGGCTATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGCAAGCACATAGTATTGCTCCAGATGCATCCGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATAGTGGACTTCAGGTAGCAAATGAAATGGCAGCTGGTGGCACTTGGAGGAAACAAGAGCAATCGGGCGCTGAACTTGTAGCAGAAGGTAATTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCACTGCTGAACCACCAACTGGTTCCTTACACAATGAGAGCCTATCCATTAGTGTAACTAGAGTCGACTCTAGTGTGCTGGATCGTACCAGAGGTATTGTGAGTAATATTCTTGATGGAAAATCGGATTCCACAATGCATGCATCTTCACCTTCATTTTTGGGTATTCATGAGCATAGCACGTTGAAGAATGTAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAACACTGTACCCATTCCGTTTTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCATGCAGCACGACCATAGGGGTACTGTAGCTGTCGAAACGCTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGTAGGGGTCAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACAATTCAAAATCTTTGTGATACACTTAGAACTATCCTCCGATTGTAG | 2481 | 47.0 | MDPPTSNRSRRTTNKSDLYSTVVIHSNSDSDSDNNPDDRNLHRRRRPPSEGQDLYATMLYKDVDKPRDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMFVKTDRNRPRNRSVSSSVSTMPRKRAGSEEGDDSEEDDGDGYSTFVVRSTARSRNRESVSGTVVRRTAGSRSGSRDGGGGLEGSTMGRAVASMQGMGELGFGKQRKGNGSRRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIGKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNQDYGDTVPSKPQNSGLQVANEMAAGGTWRKQEQSGAELVAEGNFGTVIVHDGDENDKVASQLDIGTAEPPTGSLHNESLSISVTRVDSSVLDRTRGIVSNILDGKSDSTMHASSPSFLGIHEHSTLKNVTVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQHDHRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL | 826 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23296682 | 23311960 | + | ClG42_11g0135200.10 | Clacu11g1352 | 262229 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1352 | 826 | CDD | STKc_MAP4K3_like | 255 | 510 | - | - | |
Clacu11g1352 | 826 | MobiDBLite | consensus disorder prediction | 24 | 94 | - | - | |
Clacu11g1352 | 826 | ProSitePatterns | Protein kinases ATP-binding region signature. | 262 | 285 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g1352 | 826 | MobiDBLite | consensus disorder prediction | 212 | 251 | - | - | |
Clacu11g1352 | 826 | MobiDBLite | consensus disorder prediction | 115 | 200 | - | - | |
Clacu11g1352 | 826 | MobiDBLite | consensus disorder prediction | 31 | 50 | - | - | |
Clacu11g1352 | 826 | Pfam | Protein kinase domain | 256 | 510 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1352 | 826 | MobiDBLite | consensus disorder prediction | 219 | 233 | - | - | |
Clacu11g1352 | 826 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TAO | 228 | 567 | IPR050285 | GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER) | |
Clacu11g1352 | 826 | FunFam | Aurora kinase A | 248 | 337 | - | - | |
Clacu11g1352 | 826 | MobiDBLite | consensus disorder prediction | 160 | 183 | - | - | |
Clacu11g1352 | 826 | Gene3D | Transferase(Phosphotransferase) domain 1 | 252 | 544 | - | - | |
Clacu11g1352 | 826 | ProSiteProfiles | Protein kinase domain profile. | 256 | 510 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1352 | 826 | SUPERFAMILY | Protein kinase-like (PK-like) | 253 | 511 | IPR011009 | - | |
Clacu11g1352 | 826 | SMART | serkin_6 | 256 | 510 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1352 | 826 | FunFam | serine/threonine-protein kinase dst1 isoform X1 | 253 | 543 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu07g0694 | Clacu-Chr7:13901304 | Clacu11g1352 | Clacu-Chr11:23296682 | 0.00E+00 | dispersed | |
Clacu10g1187 | Clacu-Chr10:24598615 | Clacu11g1352 | Clacu-Chr11:23296682 | 6.80E-33 | dispersed | |
Clacu11g1352 | Clacu-Chr11:23296682 | Clacu11g1974 | Clacu-Chr11:30675950 | 1.70E-70 | dispersed | |
Clacu11g1352 | Clacu-Chr11:23296682 | Clacu03g1576 | Clacu-Chr3:29339844 | 6.00E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73972 | PF00069 | Pkinase | 7.40E-68 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1352 | - | - | - | 0.0 |