Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1352 ATGGATCCCCCAACCTCCAACCGTAGTCGTAGAACTACCAACAAATCTGATCTCTACTCCACCGTTGTCATCCATTCCAATTCTGATTCCGACTCCGATAACAATCCCGACGATCGGAATCTTCACCGTCGACGAAGGCCGCCGAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGTGACGACGATGATGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGCGGAGCTCCAATTGACTACGAGGATGACCATGCTTTTGATTTCGATCACGATACCGAAGACTTCGGTACCATGTTCGTCAAGACGGATAGGAATCGTCCTCGAAATCGCTCTGTGTCTTCATCAGTTTCGACCATGCCCCGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGGGTATTCTACGTTTGTGGTGAGGTCCACGGCCAGGTCGCGGAACAGGGAATCGGTTAGTGGGACTGTTGTTCGAAGGACCGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGAGGGGTCCACGATGGGCAGAGCGGTCGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACGGAGGAGTGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCGAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTCTCTGCTATTGAAATGGCCGAGGGGCTTCCTCCAAGATCGGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGCTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGGGAAATGCAGATGTGGGGCATCGGCTATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGCAAGCACATAGTATTGCTCCAGATGCATCCGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATAGTGGACTTCAGGTAGCAAATGAAATGGCAGCTGGTGGCACTTGGAGGAAACAAGAGCAATCGGGCGCTGAACTTGTAGCAGAAGGTAATTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCACTGCTGAACCACCAACTGGTTCCTTACACAATGAGAGCCTATCCATTAGTGTAACTAGAGTCGACTCTAGTGTGCTGGATCGTACCAGAGGTATTGTGAGTAATATTCTTGATGGAAAATCGGATTCCACAATGCATGCATCTTCACCTTCATTTTTGGGTATTCATGAGCATAGCACGTTGAAGAATGTAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAACACTGTACCCATTCCGTTTTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCATGCAGCACGACCATAGGGGTACTGTAGCTGTCGAAACGCTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGTAGGGGTCAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACAATTCAAAATCTTTGTGATACACTTAGAACTATCCTCCGATTGTAG 2481 47.0 MDPPTSNRSRRTTNKSDLYSTVVIHSNSDSDSDNNPDDRNLHRRRRPPSEGQDLYATMLYKDVDKPRDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMFVKTDRNRPRNRSVSSSVSTMPRKRAGSEEGDDSEEDDGDGYSTFVVRSTARSRNRESVSGTVVRRTAGSRSGSRDGGGGLEGSTMGRAVASMQGMGELGFGKQRKGNGSRRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIGKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNQDYGDTVPSKPQNSGLQVANEMAAGGTWRKQEQSGAELVAEGNFGTVIVHDGDENDKVASQLDIGTAEPPTGSLHNESLSISVTRVDSSVLDRTRGIVSNILDGKSDSTMHASSPSFLGIHEHSTLKNVTVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQHDHRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23296682 23311960 + ClG42_11g0135200.10 Clacu11g1352 262229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1352 826 CDD STKc_MAP4K3_like 255 510 - -
Clacu11g1352 826 MobiDBLite consensus disorder prediction 24 94 - -
Clacu11g1352 826 ProSitePatterns Protein kinases ATP-binding region signature. 262 285 IPR017441 GO:0005524(InterPro)
Clacu11g1352 826 MobiDBLite consensus disorder prediction 212 251 - -
Clacu11g1352 826 MobiDBLite consensus disorder prediction 115 200 - -
Clacu11g1352 826 MobiDBLite consensus disorder prediction 31 50 - -
Clacu11g1352 826 Pfam Protein kinase domain 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1352 826 MobiDBLite consensus disorder prediction 219 233 - -
Clacu11g1352 826 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 228 567 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Clacu11g1352 826 FunFam Aurora kinase A 248 337 - -
Clacu11g1352 826 MobiDBLite consensus disorder prediction 160 183 - -
Clacu11g1352 826 Gene3D Transferase(Phosphotransferase) domain 1 252 544 - -
Clacu11g1352 826 ProSiteProfiles Protein kinase domain profile. 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1352 826 SUPERFAMILY Protein kinase-like (PK-like) 253 511 IPR011009 -
Clacu11g1352 826 SMART serkin_6 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1352 826 FunFam serine/threonine-protein kinase dst1 isoform X1 253 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0694 Clacu-Chr7:13901304 Clacu11g1352 Clacu-Chr11:23296682 0.00E+00 dispersed
Clacu10g1187 Clacu-Chr10:24598615 Clacu11g1352 Clacu-Chr11:23296682 6.80E-33 dispersed
Clacu11g1352 Clacu-Chr11:23296682 Clacu11g1974 Clacu-Chr11:30675950 1.70E-70 dispersed
Clacu11g1352 Clacu-Chr11:23296682 Clacu03g1576 Clacu-Chr3:29339844 6.00E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73972 PF00069 Pkinase 7.40E-68 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1352 - - - 0.0