Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1359 ATGGAGAACATTCTGGACGAGTATGGGTATTACTGGGAAACGAATATGTTTCTGCAGACGCAAGAGTTCGACAGTTGGGGATTGGATGAAGCATTTTACGGTTCTTACGATTCGAGCTCGCCCGACGGAACGCTGTCGTCGTTAGAGGCATCCAAGAACATCTTATCGGAGAGGAATCGGAGGAAGAAGCTCAACGATAGGCTTCTTGCTCTCAGAGCTGTGGTCCCTAATATCACCAAGATGGACAAGGCGTCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGCAAGAAAAGAGAATCGAATCGGAGATTTCAGATCTGGAAGGCAAAATCGAGAACAGAACAACAAATGAAGAAGACGACGACCATAATGGCAGTGGAAACTCCAGAAAGAGAACGAACGATTATAATCGACAAGTACGAGAGAAGCCATCCTCAATCCCGATCGAAATTCTCGATTTGAGCGTGAATTACATGGGAGAGAAGACGATGGTAGTGAGTTTGACGTGCGGAAGAAGAAGCGATGCGGTACTGAAAGTTAGTCAAGTAATTGAATCGCTGAAGCTTAAGATTATTACGGCCAATATCATCGTTGTTGCCAACAGAGTTATGAATACGCTCTTCCTTGAGGCAGAGAGAGCAGAGGAAGAGGAACTTAAGGTAAAAATAGAAAGAGCCATTGCAGCAATTAGTGATCAACAAAGCCCTACGAGCATTTGA 732 44.95 MENILDEYGYYWETNMFLQTQEFDSWGLDEAFYGSYDSSSPDGTLSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIESEISDLEGKIENRTTNEEDDDHNGSGNSRKRTNDYNRQVREKPSSIPIEILDLSVNYMGEKTMVVSLTCGRRSDAVLKVSQVIESLKLKIITANIIVVANRVMNTLFLEAERAEEEELKVKIERAIAAISDQQSPTSI 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23576940 23584960 - ClG42_11g0135900.10 Clacu11g1359 262236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1359 243 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Clacu11g1359 243 MobiDBLite consensus disorder prediction 110 145 - -
Clacu11g1359 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
Clacu11g1359 243 Coils Coil 213 233 - -
Clacu11g1359 243 Gene3D - 47 114 IPR036638 GO:0046983(InterPro)
Clacu11g1359 243 Coils Coil 87 114 - -
Clacu11g1359 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 49 224 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu11g1359 243 Pfam Helix-loop-helix DNA-binding domain 54 98 IPR011598 GO:0046983(InterPro)
Clacu11g1359 243 MobiDBLite consensus disorder prediction 110 143 - -
Clacu11g1359 243 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Clacu11g1359 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 114 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2734 Clacu-Chr5:34837709 Clacu11g1359 Clacu-Chr11:23576940 1.00E-17 dispersed
Clacu08g1345 Clacu-Chr8:23465148 Clacu11g1359 Clacu-Chr11:23576940 2.50E-12 dispersed
Clacu10g0161 Clacu-Chr10:1951009 Clacu11g1359 Clacu-Chr11:23576940 3.20E-11 dispersed
Clacu11g1203 Clacu-Chr11:19089059 Clacu11g1359 Clacu-Chr11:23576940 1.80E-10 dispersed
Clacu11g1359 Clacu-Chr11:23576940 Clacu11g1668 Clacu-Chr11:27894256 1.80E-12 dispersed
Clacu02g2215 Clacu-Chr2:35256013 Clacu11g1359 Clacu-Chr11:23576940 3.10E-17 transposed
Clacu11g1359 Clacu-Chr11:23576940 Clacu06g1470 Clacu-Chr6:25641482 1.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48658 PF00010 HLH 7.30E-11 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1359 - - - 0.0