Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1359 | ATGGAGAACATTCTGGACGAGTATGGGTATTACTGGGAAACGAATATGTTTCTGCAGACGCAAGAGTTCGACAGTTGGGGATTGGATGAAGCATTTTACGGTTCTTACGATTCGAGCTCGCCCGACGGAACGCTGTCGTCGTTAGAGGCATCCAAGAACATCTTATCGGAGAGGAATCGGAGGAAGAAGCTCAACGATAGGCTTCTTGCTCTCAGAGCTGTGGTCCCTAATATCACCAAGATGGACAAGGCGTCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGCAAGAAAAGAGAATCGAATCGGAGATTTCAGATCTGGAAGGCAAAATCGAGAACAGAACAACAAATGAAGAAGACGACGACCATAATGGCAGTGGAAACTCCAGAAAGAGAACGAACGATTATAATCGACAAGTACGAGAGAAGCCATCCTCAATCCCGATCGAAATTCTCGATTTGAGCGTGAATTACATGGGAGAGAAGACGATGGTAGTGAGTTTGACGTGCGGAAGAAGAAGCGATGCGGTACTGAAAGTTAGTCAAGTAATTGAATCGCTGAAGCTTAAGATTATTACGGCCAATATCATCGTTGTTGCCAACAGAGTTATGAATACGCTCTTCCTTGAGGCAGAGAGAGCAGAGGAAGAGGAACTTAAGGTAAAAATAGAAAGAGCCATTGCAGCAATTAGTGATCAACAAAGCCCTACGAGCATTTGA | 732 | 44.95 | MENILDEYGYYWETNMFLQTQEFDSWGLDEAFYGSYDSSSPDGTLSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIESEISDLEGKIENRTTNEEDDDHNGSGNSRKRTNDYNRQVREKPSSIPIEILDLSVNYMGEKTMVVSLTCGRRSDAVLKVSQVIESLKLKIITANIIVVANRVMNTLFLEAERAEEEELKVKIERAIAAISDQQSPTSI | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23576940 | 23584960 | - | ClG42_11g0135900.10 | Clacu11g1359 | 262236 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1359 | 243 | SMART | finulus | 54 | 103 | IPR011598 | GO:0046983(InterPro) | |
Clacu11g1359 | 243 | MobiDBLite | consensus disorder prediction | 110 | 145 | - | - | |
Clacu11g1359 | 243 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 97 | IPR011598 | GO:0046983(InterPro) | |
Clacu11g1359 | 243 | Coils | Coil | 213 | 233 | - | - | |
Clacu11g1359 | 243 | Gene3D | - | 47 | 114 | IPR036638 | GO:0046983(InterPro) | |
Clacu11g1359 | 243 | Coils | Coil | 87 | 114 | - | - | |
Clacu11g1359 | 243 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 49 | 224 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Clacu11g1359 | 243 | Pfam | Helix-loop-helix DNA-binding domain | 54 | 98 | IPR011598 | GO:0046983(InterPro) | |
Clacu11g1359 | 243 | MobiDBLite | consensus disorder prediction | 110 | 143 | - | - | |
Clacu11g1359 | 243 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 45 | 114 | - | - | |
Clacu11g1359 | 243 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 53 | 114 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g2734 | Clacu-Chr5:34837709 | Clacu11g1359 | Clacu-Chr11:23576940 | 1.00E-17 | dispersed | |
Clacu08g1345 | Clacu-Chr8:23465148 | Clacu11g1359 | Clacu-Chr11:23576940 | 2.50E-12 | dispersed | |
Clacu10g0161 | Clacu-Chr10:1951009 | Clacu11g1359 | Clacu-Chr11:23576940 | 3.20E-11 | dispersed | |
Clacu11g1203 | Clacu-Chr11:19089059 | Clacu11g1359 | Clacu-Chr11:23576940 | 1.80E-10 | dispersed | |
Clacu11g1359 | Clacu-Chr11:23576940 | Clacu11g1668 | Clacu-Chr11:27894256 | 1.80E-12 | dispersed | |
Clacu02g2215 | Clacu-Chr2:35256013 | Clacu11g1359 | Clacu-Chr11:23576940 | 3.10E-17 | transposed | |
Clacu11g1359 | Clacu-Chr11:23576940 | Clacu06g1470 | Clacu-Chr6:25641482 | 1.50E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48658 | PF00010 | HLH | 7.30E-11 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1359 | - | - | - | 0.0 |