Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1388 ATGGGAAACGACACCGCTTTAACTCTCGAAGAGATCAAGAACGAGACTGTTGATCTGGAGAAAATTCCTATTGAAGAAGTGTTTGAGCAGCTGAAATGTACAAGAGAAGGTTTAAGTTCTCAAGAAGGGGAGAACCGTCTTCAAATCTTTGGTCCCAACAAGCTAGAAGAGAAAAAGGAAAGCAAGATTCTGAAGTTTCTTGGGTTTATGTGGAATCCTCTTTCTTGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCCTTGGCCAACGGTGGCGGCCGGGGACCGGATTGGCAGGACTTTGTCGGTATTGTCTGTCTGTTGGTTATCAACTCCACCATCAGTTTCATTGAAGAGAACAATGCTGGTAATGCAGCAGCTGCTCTTATGGCTGGTCTTGCACCTAAGACTAAGGTTCTAAGGGATGGAAAATGGTGTGAACAAGATGCATCAATTCTAGTACCAGGCGATGTGATCAGTGTGAAATTGGGAGACATCATCCCGGCCGACGCTCGTCTTCTCGAGGGTGATCCATTAAAGGTTGATCAATCCGCCTTAACTGGAGAATCACTTCCTGTAACCAAGAATCCAGGGGATGAAGTTTTCTCTGGCTCAACTTGCAAACAAGGAGAAATTGAAGCTGTTGTTATTGCTACTGGTGTCCACACCTTCTTTGGAAAAGCAGCTCATCTTGTTGATAGCACTAACCAAGTTGGACACTTCCAAAAGGTTCTCACTGCCATTGGGAACTTCTGTATTTGCTCCATTGCCATTGGTATGTTGATTGAGATCCTCGTCATGTACCCAATCCAACACCGTGCCTACAGAGACGGAATTGACAACCTTTTGGTTCTCTTGATTGGAGGCATTCCAATTGCTATGCCTACTGTCTTGTCTGTGACTATGGCTATTGGTTCTCACAAGCTGTCCCAACAAGGTGCTATCACCAAGAGAATGACTGCTATCGAAGAAATGGCCGGTATGGACGTTCTTTGCAGTGACAAAACCGGAACGCTGACTCTTAACAAGTTGAGTGTTGACAAGAACTTGATTGAGGTATTTGCCAAGGGCGTAGACAAAGAACATGTCATTCTTCTTGCTGCAAGAGCTTCTAGGACTGAAAACCAGGATGCAATTGATGCTGCCATGGTTGGAATGCTCGCTGACCCGAAAGAGGCAAGAGCTGGAATTAGAGAAATTCACTTCTTCCCATTTAACCCTGTGGATAAGAGAACTGCTTTGACTTACATTGATTCCAATGGAAACTGGCACCGTGCTAGCAAAGGTGCTCCCGAACAGATCTTGACTCTTTGCAACTGCAAAGAAGACTTCAAGAGGAAGGTGTTTTCTGTTATTGACAAGTTTGCCGAGCGTGGACTTCGATCGTTGGCTGTTGCTAGACAGGAAGTGCCTGAGAAGACTAAGGAGAGTCCTGGTGCACCATGGCAATTTGTTGGTTTGTTGCCCCTTTTCGATCCTCCTAGACACGATAGTGCAGAAACTATTCGCAGGGCTCTCAACTTGGGTGTGAATGTCAAGATGATTACTGGTGATCAACTTGCTATTGCAAAGGAAACCGGTCGAAGACTTGGAATGGGAACAAATATGTATCCATCTTCTTCCTTACTTGGCCAGCACAAGGACGAAAGCATTGCTGGACTTCCAGTTGAAGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTGTTTCCAGAACACAAGTATGAAATCGTAAAGAAGTTGCAAGAGAGAAAGCACATTTGTGGAATGACAGGAGATGGTGTGAATGATGCTCCTGCTTTGAAGAAGGCAGACATTGGTATTGCTGTTGCTGATGCTACTGATGCAGCAAGAAGTGCGTCCGACATTGTCCTTACTGAGCCTGGTTTGAGTGTTATCATCAGCGCCGTGTTGACCAGCAGGGCAATCTTCCAGAGGATGAAGAACTATACTATCTATGCAGTTTCCATCACTATTCGTATTGTGTTTGGTTTCATGTTGATTGCCCTCATCTGGAAGTTTGATTTCTCTCCCTTCATGGTTTTGATTATTGCTATCCTGAATGATGGTACAATTATGACAATCTCAAAGGACAGGGTGAAGCCATCTCCATTACCTGACAGTTGGAAACTGAAGGAGATTTTTGCAACTGGAGTAGTACTTGGAGGATACTTGGCATTGATGACGGTTATATTCTTTTGGTTAATGGACGGAACGGACTTCTTTTCTGATAAATTCGGTGTAAGATCGATCCGTGGTAATGAAGATGAAAAGATGGCTGCATTGTACCTTCAAGTGAGTATTGTCAGCCAGGCTTTGATTTTTGTAACTAGATCGCGCGGCTGGTCGTATGTTGAGCGACCTGGACTTCTATTAGTGGGCGCTTTCTTGGTTGCACAACTGGTTGCAACTTTGATCGCGGTATATGCAAACTGGGGATTTGCAAAGATCAAGGGAATCGGATGGGGATGGGCCGGTGTCATCTGGCTGTACAGCATTGTTTTCTACATTCCACTCGATATCATGAAGTTTGCTATTCGATACATATTGAGCGGAAAGGCATGGCTAAACTTGTTAGAAAACAAGACTGCTTTCACCACCAAGAAAGACTATGGAAAAGAGGAAAGAGAAGCTCAATGGGCCCTTGCTCAAAGGACATTACATGGACTTCAACCACCCGAGTCGACAAACATCTTCTCCGAAAAGAGCAGCTACAGAGAACTCTCCGAGATCGCAGAGCAAGCCAAGAGACGTGCTGAGATTGCAAGGCTCCGAGAGCTCAACACACTCAAAGGACACGTTGAGTCGGTGGTGAAGTTGAAGGGACTCGACATCGACACCATCCAACAACACTACACAGTGTGA 2865 45.17 MGNDTALTLEEIKNETVDLEKIPIEEVFEQLKCTREGLSSQEGENRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGRGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWCEQDASILVPGDVISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLIEILVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKEHVILLAARASRTENQDAIDAAMVGMLADPKEARAGIREIHFFPFNPVDKRTALTYIDSNGNWHRASKGAPEQILTLCNCKEDFKRKVFSVIDKFAERGLRSLAVARQEVPEKTKESPGAPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWLMDGTDFFSDKFGVRSIRGNEDEKMAALYLQVSIVSQALIFVTRSRGWSYVERPGLLLVGAFLVAQLVATLIAVYANWGFAKIKGIGWGWAGVIWLYSIVFYIPLDIMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESTNIFSEKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 954
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 24399862 24405797 - ClG42_11g0138800.10 Clacu11g1388 262265
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1388 954 PANTHER CALCIUM-TRANSPORTING ATPASE 20 878 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Clacu11g1388 954 CDD P-type_ATPase_H 37 844 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Clacu11g1388 954 SUPERFAMILY HAD-like 328 638 IPR036412 -
Clacu11g1388 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
Clacu11g1388 954 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g1388 954 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g1388 954 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g1388 954 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g1388 954 PRINTS H+-transporting ATPase (proton pump) signature 763 784 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g1388 954 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Clacu11g1388 954 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Clacu11g1388 954 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Clacu11g1388 954 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Clacu11g1388 954 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Clacu11g1388 954 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Clacu11g1388 954 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Clacu11g1388 954 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
Clacu11g1388 954 FunFam ATPase 4 plasma membrane-type 576 818 - -
Clacu11g1388 954 NCBIfam HAD-IC family P-type ATPase 566 679 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g1388 954 NCBIfam HAD-IC family P-type ATPase 104 351 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu11g1388 954 SFLD p-type atpase 314 642 IPR044492 -
Clacu11g1388 954 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Clacu11g1388 954 Gene3D - 135 219 - -
Clacu11g1388 954 FunFam Plasma membrane ATPase 135 219 - -
Clacu11g1388 954 Gene3D - 903 954 - -
Clacu11g1388 954 SFLD Haloacid Dehalogenase 314 642 - -
Clacu11g1388 954 Gene3D - 344 491 IPR023299 GO:0000166(InterPro)
Clacu11g1388 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 850 IPR023298 -
Clacu11g1388 954 Gene3D - 97 818 - -
Clacu11g1388 954 Pfam E1-E2 ATPase 134 311 - -
Clacu11g1388 954 NCBIfam plasma-membrane proton-efflux P-type ATPase 37 809 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Clacu11g1388 954 FunFam Plasma membrane ATPase 484 639 - -
Clacu11g1388 954 Coils Coil 905 925 - -
Clacu11g1388 954 FunFam Plasma membrane ATPase 344 491 - -
Clacu11g1388 954 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Clacu11g1388 954 Gene3D - 329 628 IPR023214 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1508 Clacu-Chr1:27186895 Clacu11g1388 Clacu-Chr11:24399862 0.00E+00 dispersed
Clacu05g1912 Clacu-Chr5:28332426 Clacu11g1388 Clacu-Chr11:24399862 0.00E+00 dispersed
Clacu08g1422 Clacu-Chr8:24284781 Clacu11g1388 Clacu-Chr11:24399862 0.00E+00 dispersed
Clacu09g1885 Clacu-Chr9:33678719 Clacu11g1388 Clacu-Chr11:24399862 0.00E+00 dispersed
Clacu11g1343 Clacu-Chr11:23006038 Clacu11g1388 Clacu-Chr11:24399862 4.60E-42 dispersed
Clacu11g1388 Clacu-Chr11:24399862 Clacu02g0837 Clacu-Chr2:9848786 2.20E-08 dispersed
Clacu07g1246 Clacu-Chr7:27283934 Clacu11g1388 Clacu-Chr11:24399862 0.00E+00 transposed
Clacu11g0493 Clacu-Chr11:4662735 Clacu11g1388 Clacu-Chr11:24399862 0.00E+00 transposed
Clacu11g1388 Clacu-Chr11:24399862 Clacu06g1450 Clacu-Chr6:25395763 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1388 K01535 - csv:101221564 1805.42