Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1440 | ATGGTCACAAAGGATTTGTATTCTTTGTACAAAGGAGTTTTCCCTTTGGCCGATTTCCCTTCTCTTTCCTTCCCTCCGCCTTCGACAATCGACACCGTCATCTCCGTTCTTCAGTTCTTCCTCCTCTCAATCTTCTCATCTTCCTCACCTCACCGTTTGCTGCTTTCTTCCCTCACCGTCGATCTCCCTCCACTCCGTCGATCACCCTCACGCCGTTTCTCTAATTCCACTCCATCGATCTCCCTCACGCCGCCTCTCTCCTCCACTCCCTCGATTTCCACTGGCAGTGTGTCCAAACTCCCAAGGGCCTCAGGCTTAGCTATTCATCACTGTAAGGATGTTTTTTTGATTCCTTATGATGTGCAAATGGATTTGGGGAAACAGAAGAATTTGATGGATAGCCCTTTGACGCGGAGCTCTACCCCTAATTCCTCACCTATCTCAAATCCTGGTTCAAATGATGAAAGCCCACGTGTTAAATTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGGTATGTTGGGGGAGAGACGAGGATTGTGAGTGTTCAGAGGGATATTACATATGAGGAGTTAATGATTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAGTACCAGCAACCAGATGAGGATCCTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGTGACGGGTTCACTAGGCTGAGGATATTCTTGTTTTCACATCCTGAACAAGATGGTTCTTTGCCCTTTGTGGATGGCGATGAGAGGGATACTGAAAGGCGATATGTAGATGCTCTTAATAATTCAAATGACATGAATGATTTTGTTAGACAACAACAGCTAAATTCCCCTGCAATTAGTGGCATAGATGATATGCACGGGAATGAACATTTTTTGAACCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGTGAGCCCTTGTCACAATATCATCTGCATCAGCTCACAATCCCCCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCCCAAAGGTATAGTGAAATGGAAGCTCCATGGAGTCCTGCTTTCCTTTCACCGAGGCATCATGGTCCATATGATTCAAGAACGATGGGTGAATATCCATCTTCTCCATTTGCACGATACCGTATGCCATTCCCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAGCAAATGAATCACCAACATATGTATGAACATCAACCACAATATAACGAGAATATTGTATGGCTGCCAAATGGAACAACTAGTGAAGAGTCAGGTTTCCCAGGTAATATATTACATGGACATGGTGTTCTAGATGGGAATAGTTCTTGTGAACACTGTCGGGCAAATTTTCATCGGTATCAAACACACATGGAACAAGCTAATACGATAAATGGACTTCCCCCTGAATACCCTCAGAATAGAGAGGCCTTGATGCAGAAGGCAGACATGAAGTTCCATCATGGTATTTTTCCAAATGAGCAGAATATTAACGATCATCGATCTAGTTATAATGAGACACCACCCCATGAGAAAGGATGGATTATGCAACAACAGGTGAGTGTGCGAGGGGATGACACGAGAACACATGTTTCTGGGGCTGGACGATTGAATGATCACTACATTGTGGATGGTTCTGGCTCAAATTTTCCTCCTACACAAAGTAATATAACTGATGGCTACCATGCTTCCACAAATTTTCATGATGAGGGATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCCAGAAGATCGTGGTGTTGGTTATATGCCTTATGGATATGGAGGAGATCCTCATTATCCTCCAATGGCACAAAGGCATATGCCTGGAAATGCCTCTTGGCGAAATGTTCAGAATCCATTACATGTTGCTCCCACTTATGAAGCATCTGTTTTCCTTCAACAAGGGAATGCGAGCATAAATCCAGGATATATCAAAGCCATGCAGGATGGTAGTCCACGAATTCATATCGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAACAAAAAATTTTGGGTATTGAGGGTGCAACTGGTTCAGAGCATTTACCTGGACATGTTTTGAAGACTAACTCGACCGCGGTTGGCCATGACAATCAACACTTAACAAGTTTAGAACATATCCAACCACATCTAGATAAGATAAACCTTGTTGCTTCTCCTATGCAGAGGTCAGATTCATCTTCACCATTTATTCATGAAAAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCGCAACCGAGGGCTGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGAAAAGTTGTGCATGGGGAAGGAAATGGACACATGATTAACGATACGGGGAAAGTTGACATCTCTGAAGCACACATTGTTTCTCATCCCGGTCAAAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATCGTTAAATTCAACTTGCATGAACTCTGCAGTAGAAAATGGTGATGGGCTGAAACCTTCTGCAGAGACTCTTGAAAAGCCTAAACTATCAGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTGCAAAGAGCAGCACTAGAAGTATCTGAAGAGGCAATGGTTGAAGAAACCGCTCAAAGGGGTCCTGATTCAATAGGAAAAAAAGAGACAACAAATGAGCAACATTCCTCGAATGCCCATGGGGAACCTGAGTTGGAAACTGAGAGTGACAATCAAAGCTCTGAAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCAAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTACCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCTTCGGAAAGGGAACGTTTGATTGCAGATTTTTGGAAGGAAGCTTTGATATTAAGTTCTTTACACCATCCAAATGTTGTTTCCTTCTATGGTATTGTTCGTGACGGTCCTGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTTAATGGATCATTGAAGCAGTTTTTGCACAAGAAGGACAGGACCATCGATCGCCGTAAGAGACTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAGAGGCCTGTATGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGACAACACACGTTAGTGTCAGGAGGGGTTCGTGGAACTTTGCCCTGGATGGCACCGGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATCGATGTTTACTCATTTGGGATTGTTATGTGGGAACTACTCACAGGAGATGAACCATATTCAGATATGCATTGTGCTTCTATAATTGGAGGAATTGTGAACAATTGTTTACGCCCTGAAATTCCGACATGGTGCGATCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATAGACTGCATTGCTGGGAGACTACAAGTACAGATATGAAGGAGATCCACGTAGGCATTGGGAATGATTTCACTTGGGATTCTGCCGTTGGAAGCGTACGCCAAACAGTAATGATACAATACATATATATGTTGGTTCTGCTATAA | 3843 | 43.2 | MVTKDLYSLYKGVFPLADFPSLSFPPPSTIDTVISVLQFFLLSIFSSSSPHRLLLSSLTVDLPPLRRSPSRRFSNSTPSISLTPPLSSTPSISTGSVSKLPRASGLAIHHCKDVFLIPYDVQMDLGKQKNLMDSPLTRSSTPNSSPISNPGSNDESPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVQRDITYEELMIKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPEQDGSLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQLNSPAISGIDDMHGNEHFLNPMNIEGSLHTQRSCEPLSQYHLHQLTIPHVGSGGQQQSVAQRYSEMEAPWSPAFLSPRHHGPYDSRTMGEYPSSPFARYRMPFPDLPDKYLERMPEDYVRQQMNHQHMYEHQPQYNENIVWLPNGTTSEESGFPGNILHGHGVLDGNSSCEHCRANFHRYQTHMEQANTINGLPPEYPQNREALMQKADMKFHHGIFPNEQNINDHRSSYNETPPHEKGWIMQQQVSVRGDDTRTHVSGAGRLNDHYIVDGSGSNFPPTQSNITDGYHASTNFHDEGFRDQVVPSGQHMCVPPPEDRGVGYMPYGYGGDPHYPPMAQRHMPGNASWRNVQNPLHVAPTYEASVFLQQGNASINPGYIKAMQDGSPRIHIGMDHQNPWHESSQQKILGIEGATGSEHLPGHVLKTNSTAVGHDNQHLTSLEHIQPHLDKINLVASPMQRSDSSSPFIHEKKMVAPFHPSQNPQPRAVSVVNEAMMMERKVVHGEGNGHMINDTGKVDISEAHIVSHPGQNNTDDTYSKVAPLESLNSTCMNSAVENGDGLKPSAETLEKPKLSVSRLSFLPELIASVQRAALEVSEEAMVEETAQRGPDSIGKKETTNEQHSSNAHGEPELETESDNQSSEIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRNMAAAMNRLHCWETTSTDMKEIHVGIGNDFTWDSAVGSVRQTVMIQYIYMLVLL | 1280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25386702 | 25399113 | - | ClG42_11g0144000.10 | Clacu11g1440 | 262317 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1440 | 1280 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 137 | 1229 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Clacu11g1440 | 1280 | MobiDBLite | consensus disorder prediction | 69 | 94 | - | - | |
Clacu11g1440 | 1280 | MobiDBLite | consensus disorder prediction | 896 | 956 | - | - | |
Clacu11g1440 | 1280 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1049 | 1254 | - | - | |
Clacu11g1440 | 1280 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 178 | 260 | - | - | |
Clacu11g1440 | 1280 | ProSiteProfiles | Protein kinase domain profile. | 962 | 1239 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1440 | 1280 | Pfam | PB1 domain | 174 | 258 | IPR000270 | GO:0005515(InterPro) | |
Clacu11g1440 | 1280 | MobiDBLite | consensus disorder prediction | 131 | 156 | - | - | |
Clacu11g1440 | 1280 | CDD | PB1_UP2 | 162 | 258 | - | - | |
Clacu11g1440 | 1280 | SUPERFAMILY | CAD & PB1 domains | 175 | 263 | - | - | |
Clacu11g1440 | 1280 | SUPERFAMILY | Protein kinase-like (PK-like) | 949 | 1223 | IPR011009 | - | |
Clacu11g1440 | 1280 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 955 | 1049 | - | - | |
Clacu11g1440 | 1280 | ProSitePatterns | Protein kinases ATP-binding region signature. | 968 | 989 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g1440 | 1280 | CDD | STKc_MAP3K-like | 968 | 1225 | - | - | |
Clacu11g1440 | 1280 | Gene3D | Phosphorylase Kinase; domain 1 | 948 | 1048 | - | - | |
Clacu11g1440 | 1280 | Gene3D | - | 177 | 260 | - | - | |
Clacu11g1440 | 1280 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 1050 | 1241 | - | - | |
Clacu11g1440 | 1280 | SMART | serkin_6 | 962 | 1231 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1440 | 1280 | MobiDBLite | consensus disorder prediction | 66 | 94 | - | - | |
Clacu11g1440 | 1280 | SMART | PB1_new | 173 | 258 | IPR000270 | GO:0005515(InterPro) | |
Clacu11g1440 | 1280 | MobiDBLite | consensus disorder prediction | 132 | 155 | - | - | |
Clacu11g1440 | 1280 | Pfam | Protein tyrosine and serine/threonine kinase | 964 | 1225 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1440 | 1280 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1087 | 1099 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1440 | 1280 | PRINTS | Tyrosine kinase catalytic domain signature | 1152 | 1174 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1440 | 1280 | PRINTS | Tyrosine kinase catalytic domain signature | 1081 | 1099 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1440 | 1280 | PRINTS | Tyrosine kinase catalytic domain signature | 1196 | 1218 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1440 | 1280 | PRINTS | Tyrosine kinase catalytic domain signature | 1044 | 1057 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g0397 | Clacu-Chr5:3404140 | Clacu11g1440 | Clacu-Chr11:25386702 | 2.20E-143 | dispersed | |
Clacu06g1288 | Clacu-Chr6:23831199 | Clacu11g1440 | Clacu-Chr11:25386702 | 5.80E-138 | dispersed | |
Clacu10g0690 | Clacu-Chr10:9723800 | Clacu11g1440 | Clacu-Chr11:25386702 | 8.00E-30 | dispersed | |
Clacu11g1092 | Clacu-Chr11:13744302 | Clacu11g1440 | Clacu-Chr11:25386702 | 2.50E-06 | dispersed | |
Clacu11g1440 | Clacu-Chr11:25386702 | Clacu11g1648 | Clacu-Chr11:27621285 | 8.40E-48 | dispersed | |
Clacu11g1440 | Clacu-Chr11:25386702 | Clacu03g0420 | Clacu-Chr3:4611594 | 1.70E-141 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73974 | PF07714 | PK_Tyr_Ser-Thr | 1.20E-61 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1440 | - | - | - | 0.0 |