Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1440 ATGGTCACAAAGGATTTGTATTCTTTGTACAAAGGAGTTTTCCCTTTGGCCGATTTCCCTTCTCTTTCCTTCCCTCCGCCTTCGACAATCGACACCGTCATCTCCGTTCTTCAGTTCTTCCTCCTCTCAATCTTCTCATCTTCCTCACCTCACCGTTTGCTGCTTTCTTCCCTCACCGTCGATCTCCCTCCACTCCGTCGATCACCCTCACGCCGTTTCTCTAATTCCACTCCATCGATCTCCCTCACGCCGCCTCTCTCCTCCACTCCCTCGATTTCCACTGGCAGTGTGTCCAAACTCCCAAGGGCCTCAGGCTTAGCTATTCATCACTGTAAGGATGTTTTTTTGATTCCTTATGATGTGCAAATGGATTTGGGGAAACAGAAGAATTTGATGGATAGCCCTTTGACGCGGAGCTCTACCCCTAATTCCTCACCTATCTCAAATCCTGGTTCAAATGATGAAAGCCCACGTGTTAAATTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGGTATGTTGGGGGAGAGACGAGGATTGTGAGTGTTCAGAGGGATATTACATATGAGGAGTTAATGATTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAGTACCAGCAACCAGATGAGGATCCTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGTGACGGGTTCACTAGGCTGAGGATATTCTTGTTTTCACATCCTGAACAAGATGGTTCTTTGCCCTTTGTGGATGGCGATGAGAGGGATACTGAAAGGCGATATGTAGATGCTCTTAATAATTCAAATGACATGAATGATTTTGTTAGACAACAACAGCTAAATTCCCCTGCAATTAGTGGCATAGATGATATGCACGGGAATGAACATTTTTTGAACCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGTGAGCCCTTGTCACAATATCATCTGCATCAGCTCACAATCCCCCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCCCAAAGGTATAGTGAAATGGAAGCTCCATGGAGTCCTGCTTTCCTTTCACCGAGGCATCATGGTCCATATGATTCAAGAACGATGGGTGAATATCCATCTTCTCCATTTGCACGATACCGTATGCCATTCCCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAGCAAATGAATCACCAACATATGTATGAACATCAACCACAATATAACGAGAATATTGTATGGCTGCCAAATGGAACAACTAGTGAAGAGTCAGGTTTCCCAGGTAATATATTACATGGACATGGTGTTCTAGATGGGAATAGTTCTTGTGAACACTGTCGGGCAAATTTTCATCGGTATCAAACACACATGGAACAAGCTAATACGATAAATGGACTTCCCCCTGAATACCCTCAGAATAGAGAGGCCTTGATGCAGAAGGCAGACATGAAGTTCCATCATGGTATTTTTCCAAATGAGCAGAATATTAACGATCATCGATCTAGTTATAATGAGACACCACCCCATGAGAAAGGATGGATTATGCAACAACAGGTGAGTGTGCGAGGGGATGACACGAGAACACATGTTTCTGGGGCTGGACGATTGAATGATCACTACATTGTGGATGGTTCTGGCTCAAATTTTCCTCCTACACAAAGTAATATAACTGATGGCTACCATGCTTCCACAAATTTTCATGATGAGGGATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCCAGAAGATCGTGGTGTTGGTTATATGCCTTATGGATATGGAGGAGATCCTCATTATCCTCCAATGGCACAAAGGCATATGCCTGGAAATGCCTCTTGGCGAAATGTTCAGAATCCATTACATGTTGCTCCCACTTATGAAGCATCTGTTTTCCTTCAACAAGGGAATGCGAGCATAAATCCAGGATATATCAAAGCCATGCAGGATGGTAGTCCACGAATTCATATCGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAACAAAAAATTTTGGGTATTGAGGGTGCAACTGGTTCAGAGCATTTACCTGGACATGTTTTGAAGACTAACTCGACCGCGGTTGGCCATGACAATCAACACTTAACAAGTTTAGAACATATCCAACCACATCTAGATAAGATAAACCTTGTTGCTTCTCCTATGCAGAGGTCAGATTCATCTTCACCATTTATTCATGAAAAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCGCAACCGAGGGCTGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGAAAAGTTGTGCATGGGGAAGGAAATGGACACATGATTAACGATACGGGGAAAGTTGACATCTCTGAAGCACACATTGTTTCTCATCCCGGTCAAAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATCGTTAAATTCAACTTGCATGAACTCTGCAGTAGAAAATGGTGATGGGCTGAAACCTTCTGCAGAGACTCTTGAAAAGCCTAAACTATCAGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTGCAAAGAGCAGCACTAGAAGTATCTGAAGAGGCAATGGTTGAAGAAACCGCTCAAAGGGGTCCTGATTCAATAGGAAAAAAAGAGACAACAAATGAGCAACATTCCTCGAATGCCCATGGGGAACCTGAGTTGGAAACTGAGAGTGACAATCAAAGCTCTGAAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCAAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTACCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCTTCGGAAAGGGAACGTTTGATTGCAGATTTTTGGAAGGAAGCTTTGATATTAAGTTCTTTACACCATCCAAATGTTGTTTCCTTCTATGGTATTGTTCGTGACGGTCCTGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTTAATGGATCATTGAAGCAGTTTTTGCACAAGAAGGACAGGACCATCGATCGCCGTAAGAGACTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAGAGGCCTGTATGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGACAACACACGTTAGTGTCAGGAGGGGTTCGTGGAACTTTGCCCTGGATGGCACCGGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATCGATGTTTACTCATTTGGGATTGTTATGTGGGAACTACTCACAGGAGATGAACCATATTCAGATATGCATTGTGCTTCTATAATTGGAGGAATTGTGAACAATTGTTTACGCCCTGAAATTCCGACATGGTGCGATCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATAGACTGCATTGCTGGGAGACTACAAGTACAGATATGAAGGAGATCCACGTAGGCATTGGGAATGATTTCACTTGGGATTCTGCCGTTGGAAGCGTACGCCAAACAGTAATGATACAATACATATATATGTTGGTTCTGCTATAA 3843 43.2 MVTKDLYSLYKGVFPLADFPSLSFPPPSTIDTVISVLQFFLLSIFSSSSPHRLLLSSLTVDLPPLRRSPSRRFSNSTPSISLTPPLSSTPSISTGSVSKLPRASGLAIHHCKDVFLIPYDVQMDLGKQKNLMDSPLTRSSTPNSSPISNPGSNDESPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVQRDITYEELMIKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPEQDGSLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQLNSPAISGIDDMHGNEHFLNPMNIEGSLHTQRSCEPLSQYHLHQLTIPHVGSGGQQQSVAQRYSEMEAPWSPAFLSPRHHGPYDSRTMGEYPSSPFARYRMPFPDLPDKYLERMPEDYVRQQMNHQHMYEHQPQYNENIVWLPNGTTSEESGFPGNILHGHGVLDGNSSCEHCRANFHRYQTHMEQANTINGLPPEYPQNREALMQKADMKFHHGIFPNEQNINDHRSSYNETPPHEKGWIMQQQVSVRGDDTRTHVSGAGRLNDHYIVDGSGSNFPPTQSNITDGYHASTNFHDEGFRDQVVPSGQHMCVPPPEDRGVGYMPYGYGGDPHYPPMAQRHMPGNASWRNVQNPLHVAPTYEASVFLQQGNASINPGYIKAMQDGSPRIHIGMDHQNPWHESSQQKILGIEGATGSEHLPGHVLKTNSTAVGHDNQHLTSLEHIQPHLDKINLVASPMQRSDSSSPFIHEKKMVAPFHPSQNPQPRAVSVVNEAMMMERKVVHGEGNGHMINDTGKVDISEAHIVSHPGQNNTDDTYSKVAPLESLNSTCMNSAVENGDGLKPSAETLEKPKLSVSRLSFLPELIASVQRAALEVSEEAMVEETAQRGPDSIGKKETTNEQHSSNAHGEPELETESDNQSSEIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRNMAAAMNRLHCWETTSTDMKEIHVGIGNDFTWDSAVGSVRQTVMIQYIYMLVLL 1280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25386702 25399113 - ClG42_11g0144000.10 Clacu11g1440 262317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1440 1280 PANTHER SERINE-THREONINE PROTEIN KINASE 137 1229 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu11g1440 1280 MobiDBLite consensus disorder prediction 69 94 - -
Clacu11g1440 1280 MobiDBLite consensus disorder prediction 896 956 - -
Clacu11g1440 1280 Gene3D Transferase(Phosphotransferase) domain 1 1049 1254 - -
Clacu11g1440 1280 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 178 260 - -
Clacu11g1440 1280 ProSiteProfiles Protein kinase domain profile. 962 1239 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1440 1280 Pfam PB1 domain 174 258 IPR000270 GO:0005515(InterPro)
Clacu11g1440 1280 MobiDBLite consensus disorder prediction 131 156 - -
Clacu11g1440 1280 CDD PB1_UP2 162 258 - -
Clacu11g1440 1280 SUPERFAMILY CAD & PB1 domains 175 263 - -
Clacu11g1440 1280 SUPERFAMILY Protein kinase-like (PK-like) 949 1223 IPR011009 -
Clacu11g1440 1280 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 955 1049 - -
Clacu11g1440 1280 ProSitePatterns Protein kinases ATP-binding region signature. 968 989 IPR017441 GO:0005524(InterPro)
Clacu11g1440 1280 CDD STKc_MAP3K-like 968 1225 - -
Clacu11g1440 1280 Gene3D Phosphorylase Kinase; domain 1 948 1048 - -
Clacu11g1440 1280 Gene3D - 177 260 - -
Clacu11g1440 1280 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1050 1241 - -
Clacu11g1440 1280 SMART serkin_6 962 1231 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1440 1280 MobiDBLite consensus disorder prediction 66 94 - -
Clacu11g1440 1280 SMART PB1_new 173 258 IPR000270 GO:0005515(InterPro)
Clacu11g1440 1280 MobiDBLite consensus disorder prediction 132 155 - -
Clacu11g1440 1280 Pfam Protein tyrosine and serine/threonine kinase 964 1225 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1440 1280 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1087 1099 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1440 1280 PRINTS Tyrosine kinase catalytic domain signature 1152 1174 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1440 1280 PRINTS Tyrosine kinase catalytic domain signature 1081 1099 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1440 1280 PRINTS Tyrosine kinase catalytic domain signature 1196 1218 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1440 1280 PRINTS Tyrosine kinase catalytic domain signature 1044 1057 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0397 Clacu-Chr5:3404140 Clacu11g1440 Clacu-Chr11:25386702 2.20E-143 dispersed
Clacu06g1288 Clacu-Chr6:23831199 Clacu11g1440 Clacu-Chr11:25386702 5.80E-138 dispersed
Clacu10g0690 Clacu-Chr10:9723800 Clacu11g1440 Clacu-Chr11:25386702 8.00E-30 dispersed
Clacu11g1092 Clacu-Chr11:13744302 Clacu11g1440 Clacu-Chr11:25386702 2.50E-06 dispersed
Clacu11g1440 Clacu-Chr11:25386702 Clacu11g1648 Clacu-Chr11:27621285 8.40E-48 dispersed
Clacu11g1440 Clacu-Chr11:25386702 Clacu03g0420 Clacu-Chr3:4611594 1.70E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73974 PF07714 PK_Tyr_Ser-Thr 1.20E-61 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1440 - - - 0.0