Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1447 ATGGAACATGAACTAATGAACGGCCAAGATTTCATCTTCCGATCAAAGCTCCCAGACATATACATCCCAAACCACCTCCCTCTCCACACCTATTGCTTTGAACACCTCTCCCAATTCCAGCACCGCCCTTGCCTCATCAACGGCGCCACCGGCGAGGTCCACACCTACGCCGCGGTCGACCTAGCAGCCAGACGTGTCGCTGCCGGGCTGAGCAAGATCGGCGTTGGACAAGGCGACGTCATAATGCTCGTGCTCCAAAACAGCCCCGAGTTCGTGTTTGCGTTCCTCGGCGCGTCGTTCGCCGGTGCAATTAGCACCACGGCGAACCCGCTGTACAAGCCAGGGGAGATTGCGAGGCAGGCGGCAACGGCGAGGGCGAAGGTAATAATTACGCAGGCGGAGTTTGTGGAGAAGGTTAGGGGATTTGCTGTGGAAAATGGGGTGAAGATATTGTGTACGGATTCCCCGCCGGCGGGTTGTTTGAGATTCTCGGAGGTTATGGAGGCGGATGAAAATGAGATTCCGGCGGTGAAGATTAATTCAAATGATGTTGTTGCTCTTCCTTTTTCGTCTGGAACTACTGGAATTCCTAAAGGGGTTATGTTAACGCATAAATCTCTTGTTACAAGCGTTGCTCAACAGGTGGATGGAGAGAATCCAAATGTAAACTTGAATAGCAACGATGTGATTATATGTGTTCTTCCATTATTCCATATCTATTCTCTCAACTCCGTTCTCCTCTGTGGACTACGTGTCGGCGCTGCCATTCTCATCCTCCAAAAATACGACATGTCGTCCCTTCTTCACCTCATTCAAACCCACAAGGCCACAATTGCTCCATTCGTTCCTCCCATCGTCTTGGACTTCGCCAAAAACCCCGACATCCAACGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGCGCGGCGCCTATGGGGAAGGACCTTGAGGATACCGTCAAAGCTAGGCTCCCCAATGCCACGCTCGGACAGGGGTATGGAATGACTGAGGCAGGGCCAGTGCTATCTATGTGTTTGGCGTTTGCAAAGGAACCTTTCAAGGTTAAATCAGGTGCGTGCGGGACCGTCGTAAGGAATGCTGAGATGAAGATCATACACCCTGACACTTCCGTATCTTTGCCACGTAATCACCCTGGTGAGATCTGCATACGTGGCTCCCAGATCATGAAAGGTTATCTCAACAACAAAGAAGCAACAGAGAAGACTATAGACAAAGACGGATGGCTCCACACAGGAGACTTAGGGTTCATCGACGATAACGACGAGATCTTCATCGTCGACCGATTGAAGGAACTGATCAAATACAAGGGATATCAAGTTGCCCCAGCAGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTTCTGCAGCTGCTGTCATACCTATGGAAGACGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTAATGGTTCCAAGATTAGTGAAAATGATATCAAAAAATATATTTCGGATCAGGTTATATATTACAAAAAAATCAGAAAGGTTTTGTTTGTGGACTCAATTCCAATTGCCCCTTCAGGCAAGATATTGAGGAAGGTTTTAAAAGCTCAGTTAGAGGCTGGTGCCTTTTAA 1629 48.68 MEHELMNGQDFIFRSKLPDIYIPNHLPLHTYCFEHLSQFQHRPCLINGATGEVHTYAAVDLAARRVAAGLSKIGVGQGDVIMLVLQNSPEFVFAFLGASFAGAISTTANPLYKPGEIARQAATARAKVIITQAEFVEKVRGFAVENGVKILCTDSPPAGCLRFSEVMEADENEIPAVKINSNDVVALPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNVNLNSNDVIICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDMSSLLHLIQTHKATIAPFVPPIVLDFAKNPDIQRYDLSSIRIVMSGAAPMGKDLEDTVKARLPNATLGQGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAEMKIIHPDTSVSLPRNHPGEICIRGSQIMKGYLNNKEATEKTIDKDGWLHTGDLGFIDDNDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNISAAAVIPMEDEAAGEIPVAFVVRSNGSKISENDIKKYISDQVIYYKKIRKVLFVDSIPIAPSGKILRKVLKAQLEAGAF 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25488769 25496010 - ClG42_11g0144700.10 Clacu11g1447 262324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1447 542 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Clacu11g1447 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 438 - -
Clacu11g1447 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 534 - GO:0016405(PANTHER)
Clacu11g1447 542 Gene3D - 438 540 IPR045851 -
Clacu11g1447 542 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Clacu11g1447 542 CDD 4CL 22 533 - -
Clacu11g1447 542 Gene3D - 4 437 IPR042099 -
Clacu11g1447 542 FunFam 4-coumarate--CoA ligase 2 439 540 - -
Clacu11g1447 542 SUPERFAMILY Acetyl-CoA synthetase-like 12 539 - -
Clacu11g1447 542 Pfam AMP-binding enzyme 34 401 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0387 Clacu-Chr7:4421303 Clacu11g1447 Clacu-Chr11:25488769 9.60E-11 dispersed
Clacu11g1447 Clacu-Chr11:25488769 Clacu11g1756 Clacu-Chr11:28732720 3.80E-18 dispersed
Clacu01g2596 Clacu-Chr1:36223077 Clacu11g1447 Clacu-Chr11:25488769 7.40E-24 transposed
Clacu02g0777 Clacu-Chr2:8611811 Clacu11g1447 Clacu-Chr11:25488769 8.90E-180 transposed
Clacu03g0282 Clacu-Chr3:3258102 Clacu11g1447 Clacu-Chr11:25488769 2.60E-107 transposed
Clacu10g0624 Clacu-Chr10:8457888 Clacu11g1447 Clacu-Chr11:25488769 6.40E-25 transposed
Clacu10g1274 Clacu-Chr10:25579120 Clacu11g1447 Clacu-Chr11:25488769 8.10E-210 transposed
Clacu10g1982 Clacu-Chr10:33338508 Clacu11g1447 Clacu-Chr11:25488769 3.80E-104 transposed
Clacu11g1547 Clacu-Chr11:26579742 Clacu11g1447 Clacu-Chr11:25488769 1.30E-109 transposed
Clacu11g1447 Clacu-Chr11:25488769 Clacu06g1429 Clacu-Chr6:25156681 5.60E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1447 K01904 - csv:101210868 968.763