Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1447 | ATGGAACATGAACTAATGAACGGCCAAGATTTCATCTTCCGATCAAAGCTCCCAGACATATACATCCCAAACCACCTCCCTCTCCACACCTATTGCTTTGAACACCTCTCCCAATTCCAGCACCGCCCTTGCCTCATCAACGGCGCCACCGGCGAGGTCCACACCTACGCCGCGGTCGACCTAGCAGCCAGACGTGTCGCTGCCGGGCTGAGCAAGATCGGCGTTGGACAAGGCGACGTCATAATGCTCGTGCTCCAAAACAGCCCCGAGTTCGTGTTTGCGTTCCTCGGCGCGTCGTTCGCCGGTGCAATTAGCACCACGGCGAACCCGCTGTACAAGCCAGGGGAGATTGCGAGGCAGGCGGCAACGGCGAGGGCGAAGGTAATAATTACGCAGGCGGAGTTTGTGGAGAAGGTTAGGGGATTTGCTGTGGAAAATGGGGTGAAGATATTGTGTACGGATTCCCCGCCGGCGGGTTGTTTGAGATTCTCGGAGGTTATGGAGGCGGATGAAAATGAGATTCCGGCGGTGAAGATTAATTCAAATGATGTTGTTGCTCTTCCTTTTTCGTCTGGAACTACTGGAATTCCTAAAGGGGTTATGTTAACGCATAAATCTCTTGTTACAAGCGTTGCTCAACAGGTGGATGGAGAGAATCCAAATGTAAACTTGAATAGCAACGATGTGATTATATGTGTTCTTCCATTATTCCATATCTATTCTCTCAACTCCGTTCTCCTCTGTGGACTACGTGTCGGCGCTGCCATTCTCATCCTCCAAAAATACGACATGTCGTCCCTTCTTCACCTCATTCAAACCCACAAGGCCACAATTGCTCCATTCGTTCCTCCCATCGTCTTGGACTTCGCCAAAAACCCCGACATCCAACGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGCGCGGCGCCTATGGGGAAGGACCTTGAGGATACCGTCAAAGCTAGGCTCCCCAATGCCACGCTCGGACAGGGGTATGGAATGACTGAGGCAGGGCCAGTGCTATCTATGTGTTTGGCGTTTGCAAAGGAACCTTTCAAGGTTAAATCAGGTGCGTGCGGGACCGTCGTAAGGAATGCTGAGATGAAGATCATACACCCTGACACTTCCGTATCTTTGCCACGTAATCACCCTGGTGAGATCTGCATACGTGGCTCCCAGATCATGAAAGGTTATCTCAACAACAAAGAAGCAACAGAGAAGACTATAGACAAAGACGGATGGCTCCACACAGGAGACTTAGGGTTCATCGACGATAACGACGAGATCTTCATCGTCGACCGATTGAAGGAACTGATCAAATACAAGGGATATCAAGTTGCCCCAGCAGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTTCTGCAGCTGCTGTCATACCTATGGAAGACGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTAATGGTTCCAAGATTAGTGAAAATGATATCAAAAAATATATTTCGGATCAGGTTATATATTACAAAAAAATCAGAAAGGTTTTGTTTGTGGACTCAATTCCAATTGCCCCTTCAGGCAAGATATTGAGGAAGGTTTTAAAAGCTCAGTTAGAGGCTGGTGCCTTTTAA | 1629 | 48.68 | MEHELMNGQDFIFRSKLPDIYIPNHLPLHTYCFEHLSQFQHRPCLINGATGEVHTYAAVDLAARRVAAGLSKIGVGQGDVIMLVLQNSPEFVFAFLGASFAGAISTTANPLYKPGEIARQAATARAKVIITQAEFVEKVRGFAVENGVKILCTDSPPAGCLRFSEVMEADENEIPAVKINSNDVVALPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNVNLNSNDVIICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDMSSLLHLIQTHKATIAPFVPPIVLDFAKNPDIQRYDLSSIRIVMSGAAPMGKDLEDTVKARLPNATLGQGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAEMKIIHPDTSVSLPRNHPGEICIRGSQIMKGYLNNKEATEKTIDKDGWLHTGDLGFIDDNDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNISAAAVIPMEDEAAGEIPVAFVVRSNGSKISENDIKKYISDQVIYYKKIRKVLFVDSIPIAPSGKILRKVLKAQLEAGAF | 542 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25488769 | 25496010 | - | ClG42_11g0144700.10 | Clacu11g1447 | 262324 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1447 | 542 | ProSitePatterns | Putative AMP-binding domain signature. | 187 | 198 | IPR020845 | - | |
Clacu11g1447 | 542 | FunFam | Long-chain-fatty-acid--CoA ligase FadD | 14 | 438 | - | - | |
Clacu11g1447 | 542 | PANTHER | LONG-CHAIN-FATTY-ACID--COA LIGASE | 9 | 534 | - | GO:0016405(PANTHER) | |
Clacu11g1447 | 542 | Gene3D | - | 438 | 540 | IPR045851 | - | |
Clacu11g1447 | 542 | Pfam | AMP-binding enzyme C-terminal domain | 452 | 527 | IPR025110 | - | |
Clacu11g1447 | 542 | CDD | 4CL | 22 | 533 | - | - | |
Clacu11g1447 | 542 | Gene3D | - | 4 | 437 | IPR042099 | - | |
Clacu11g1447 | 542 | FunFam | 4-coumarate--CoA ligase 2 | 439 | 540 | - | - | |
Clacu11g1447 | 542 | SUPERFAMILY | Acetyl-CoA synthetase-like | 12 | 539 | - | - | |
Clacu11g1447 | 542 | Pfam | AMP-binding enzyme | 34 | 401 | IPR000873 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu07g0387 | Clacu-Chr7:4421303 | Clacu11g1447 | Clacu-Chr11:25488769 | 9.60E-11 | dispersed | |
Clacu11g1447 | Clacu-Chr11:25488769 | Clacu11g1756 | Clacu-Chr11:28732720 | 3.80E-18 | dispersed | |
Clacu01g2596 | Clacu-Chr1:36223077 | Clacu11g1447 | Clacu-Chr11:25488769 | 7.40E-24 | transposed | |
Clacu02g0777 | Clacu-Chr2:8611811 | Clacu11g1447 | Clacu-Chr11:25488769 | 8.90E-180 | transposed | |
Clacu03g0282 | Clacu-Chr3:3258102 | Clacu11g1447 | Clacu-Chr11:25488769 | 2.60E-107 | transposed | |
Clacu10g0624 | Clacu-Chr10:8457888 | Clacu11g1447 | Clacu-Chr11:25488769 | 6.40E-25 | transposed | |
Clacu10g1274 | Clacu-Chr10:25579120 | Clacu11g1447 | Clacu-Chr11:25488769 | 8.10E-210 | transposed | |
Clacu10g1982 | Clacu-Chr10:33338508 | Clacu11g1447 | Clacu-Chr11:25488769 | 3.80E-104 | transposed | |
Clacu11g1547 | Clacu-Chr11:26579742 | Clacu11g1447 | Clacu-Chr11:25488769 | 1.30E-109 | transposed | |
Clacu11g1447 | Clacu-Chr11:25488769 | Clacu06g1429 | Clacu-Chr6:25156681 | 5.60E-203 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1447 | K01904 | - | csv:101210868 | 968.763 |