Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1455 ATGGGTTTTATTGAAGAATACTTGCCAGCAATGGCTATGTTTGGGCTTCAAGTGACTTATGCCATAATGGCTCTTATCTCCCGGGCTGCCCTTTTGAAGGGCATGAGTCCTAGAGTTTTTGTTGTTTATAGGCAAGCCATTGCCACTCTCTTTATTGCACCCATTGCTTATTTCTCCAGGTCGAAATCTAGGAGGGTGTCTTTGAACTTGAAGAGCTTTTCTCTAATCTTCCTTGCTTCTCTCGTCGGTGTGACGATGAACCAAAATGTTTACTTTGAGGGAGTTTTTTTAGTTAGCTCGTCAATGGCAACGGCAATGACTAATTTGATTCCTGCAGTGACGTTTGTTATAGCAACGATAGTCGGCATGGAGAATTTAAGGTTGGGAAGCTTGAGGAGCATCGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGGGCCATGTGTATGGCTCTTCTAAGGGGTCCAAAGCTTCTCAATACAACACAAGGTTTCGTGGTGAAATCTACATTATTTAGTGTGGAAAGTGGAAGTCACCGTGCTTGGTTATTGGGTTCCTTGTGTCTCTTTGGGAGTTGTTGTTGCTGGTCAATTTGGTTGATTTTGCAGGTACCAGCTTCAGCAAGCTATCCCGACAACTTATCTTTATCAGCATGGATGTGTTTCTTTGCCACAATTCAATCGATCATTGTTACTCTATTGGTAGAGCCAATCAATCTACAAACTTGGAAAATACATTCAACCATTGAACTTATTTGTTATCTCTTCTCAGGCATTGTTGGGTCAGGGGTTGCCTTCTTTGTTCAAGCTTGGTGTGTTTCAAAAAGAGGCCCCGTCTTCTCAGCAATGTTCAACCCTCTTTGCACCATTGTTACAACTATTTTGGCAGCTATGGTTCTTCACGAGGAAATTTTTACTGGAAGCTTGTTGGGGGGTGTGGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCAAAAGATTATGTGAAGGAAGAAGGCAAAGAAAAGCAAAGTGTTGAAAAAGAAGAAGAGAATTGTGAATCAGCTGAGAGAATTAGCAATTGTCAAATTGATTTGGAGGAACCACTTTTGTCTAAAGAATCATGA 1113 41.51 MGFIEEYLPAMAMFGLQVTYAIMALISRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSRRVSLNLKSFSLIFLASLVGVTMNQNVYFEGVFLVSSSMATAMTNLIPAVTFVIATIVGMENLRLGSLRSIAKIGGTVVCVSGAMCMALLRGPKLLNTTQGFVVKSTLFSVESGSHRAWLLGSLCLFGSCCCWSIWLILQVPASASYPDNLSLSAWMCFFATIQSIIVTLLVEPINLQTWKIHSTIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAMVLHEEIFTGSLLGGVAVIIGLYIVLWGKAKDYVKEEGKEKQSVEKEEENCESAERISNCQIDLEEPLLSKES 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25686556 25691568 - ClG42_11g0145500.10 Clacu11g1455 262332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1455 370 PANTHER WAT1-RELATED PROTEIN 11 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu11g1455 370 Pfam EamA-like transporter family 12 142 IPR000620 GO:0016020(InterPro)
Clacu11g1455 370 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020(InterPro)
Clacu11g1455 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 327 - -
Clacu11g1455 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1379 Clacu-Chr6:24655361 Clacu11g1455 Clacu-Chr11:25686556 6.40E-89 dispersed
Clacu11g1455 Clacu-Chr11:25686556 Clacu11g1749 Clacu-Chr11:28669297 1.60E-55 dispersed
Clacu11g1455 Clacu-Chr11:25686556 Clacu06g1378 Clacu-Chr6:24648600 1.10E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1455 - - - 0.0