Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1504 ATGGGAAAGCTTAGCTTGAACTGCTGTAATAGCTTCCTTGAGAATTCAAAACCTTATTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCTAAAGTCTCTCTTAGTAGAGGGATGAGTCATTACGTCCTCGTCGTTTATCGACATGCTTTCGCTACCGCTTCTATTGCTCCCTTCGTTCTCTTCTTCGAACGGAGAGGACAGCCAAGGATAACACTCAAAGTTTTCATTCAAATATTTGTGTTGGCTTTGCTTGGCCCGGTTATCGATCAAAATTTCTACTATGCTGGGCTAAAATATACTTCACCAACTTTCTCTTGTGCCATGAGCAACATGCTGCCTGCAATGACATTTGTGATGGCTGTGATCTTTAGGATGGAAAAATTGGAGATGAAGAAATTGAGATGCCAAGCAAAAGTTTTGGGAACTTTAGTGTCAGTGGCTGGAGCAATGTTGATGACTTTATACAAAGGTCCACTTCTTCAAATGGCTTGGTCTAAAAATTCCCATATCACCAATTCTAATGAAACTTCCAACAACAAAGATTGGTTCAAAGGCTCCATTTTCCTCATCATTGCCACTCTTGCTTGGGCTTCTCTCTTTGTTTTGCAGAATGAGGCATTGAAGACATACAAGAACCATCAACTCACTCTCACCACACTCGTGTGTTTTCTTGGGACTTTGCAAGCCATAGCTGTGACTTTAGTAGCGGAGCACAAAGCTTCTGTTTGGACAATTGGTTGGGACATGAATCTTCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGTTGGTGATGAAAAAGAGAGGACCTGTATTTACAACTGCATTTAGTCCTTTGATTATGATACTTGTGGCCATCATGGGCTCTCTCATCCTTGCTGAAAAGATTTTTCTTGGAGGAATAATAGGATCCATCTTGATAGTGTTTGGGCTATATTCAGTACTTTGGGGAAAGCACAAAGAGAATTTGGAGATGATTAAAACTGCTGCTGTTGATGATGAAATACCAAAAGCAATTAAAGCTTCTTCTCAACCAAATATTAATATTAATAATAATAATATTGCAAATAATGTTGAAGCTAATGAGATTGTGACCATGGCACCCAATAAGCTAAGTTCCAATAATAATTCAATTTTCATTTCCATGCCTGCCCTTGAAAACCCATTAAACCCAACCAAATCCCAAGAGAATAATAATAATTGA 1245 38.8 MGKLSLNCCNSFLENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIAPFVLFFERRGQPRITLKVFIQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKLEMKKLRCQAKVLGTLVSVAGAMLMTLYKGPLLQMAWSKNSHITNSNETSNNKDWFKGSIFLIIATLAWASLFVLQNEALKTYKNHQLTLTTLVCFLGTLQAIAVTLVAEHKASVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFTTAFSPLIMILVAIMGSLILAEKIFLGGIIGSILIVFGLYSVLWGKHKENLEMIKTAAVDDEIPKAIKASSQPNININNNNIANNVEANEIVTMAPNKLSSNNNSIFISMPALENPLNPTKSQENNNN 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26195377 26199367 - ClG42_11g0150400.10 Clacu11g1504 262381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1504 414 Pfam EamA-like transporter family 19 159 IPR000620 GO:0016020(InterPro)
Clacu11g1504 414 Pfam EamA-like transporter family 190 329 IPR000620 GO:0016020(InterPro)
Clacu11g1504 414 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 334 - -
Clacu11g1504 414 PANTHER WAT1-RELATED PROTEIN 20 350 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu11g1504 414 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0686 Clacu-Chr6:7920303 Clacu11g1504 Clacu-Chr11:26195377 2.00E-52 dispersed
Clacu06g1558 Clacu-Chr6:26488665 Clacu11g1504 Clacu-Chr11:26195377 3.90E-62 dispersed
Clacu07g0969 Clacu-Chr7:23999937 Clacu11g1504 Clacu-Chr11:26195377 7.70E-50 dispersed
Clacu10g1434 Clacu-Chr10:27482274 Clacu11g1504 Clacu-Chr11:26195377 3.20E-37 dispersed
Clacu10g1435 Clacu-Chr10:27498748 Clacu11g1504 Clacu-Chr11:26195377 3.00E-43 dispersed
Clacu10g1626 Clacu-Chr10:29619309 Clacu11g1504 Clacu-Chr11:26195377 9.70E-09 dispersed
Clacu10g1627 Clacu-Chr10:29624319 Clacu11g1504 Clacu-Chr11:26195377 9.80E-125 dispersed
Clacu11g1504 Clacu-Chr11:26195377 Clacu11g1749 Clacu-Chr11:28669297 4.70E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1504 - - - 0.0