Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1530 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAGTTTCGGCGGCAGCAGCAACAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCTCCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCCTCTAACGCCGCCGCCCCTCCTCCCCACCTCGACGCTTCACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCCAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGATGGTCGTGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGACGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGCGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGCGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTGGCGGCGGCGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGCGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCGGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGATCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1554 53.47 MELTDMQQSNKQQQQQQQQHHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPVSAAAATGGGGGGGAPPFMASISSLVSLPPPSSSNSSVSSASNAAAPPPHLDASLVIATRSDTTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSGGGGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26442793 26444346 - ClG42_11g0153000.10 Clacu11g1530 262407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1530 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 100 482 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Clacu11g1530 517 MobiDBLite consensus disorder prediction 126 145 - -
Clacu11g1530 517 MobiDBLite consensus disorder prediction 126 161 - -
Clacu11g1530 517 MobiDBLite consensus disorder prediction 1 42 - -
Clacu11g1530 517 MobiDBLite consensus disorder prediction 489 517 - -
Clacu11g1530 517 MobiDBLite consensus disorder prediction 1 113 - -
Clacu11g1530 517 MobiDBLite consensus disorder prediction 146 161 - -
Clacu11g1530 517 Pfam TCP family transcription factor 148 276 IPR017887 -
Clacu11g1530 517 MobiDBLite consensus disorder prediction 89 108 - -
Clacu11g1530 517 MobiDBLite consensus disorder prediction 311 351 - -
Clacu11g1530 517 ProSiteProfiles TCP domain profile. 149 203 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1453 Clacu-Chr2:27948851 Clacu11g1530 Clacu-Chr11:26442793 4.80E-29 dispersed
Clacu04g1303 Clacu-Chr4:26984901 Clacu11g1530 Clacu-Chr11:26442793 4.40E-34 dispersed
Clacu06g0199 Clacu-Chr6:2232923 Clacu11g1530 Clacu-Chr11:26442793 3.10E-27 dispersed
Clacu06g1733 Clacu-Chr6:27941806 Clacu11g1530 Clacu-Chr11:26442793 2.10E-37 dispersed
Clacu11g1530 Clacu-Chr11:26442793 Clacu05g2640 Clacu-Chr5:34054604 9.20E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48668 PF03634 TCP 6.50E-39 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1530 - - - 0.0