Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1547 ATGGCTACTTGCATTCGAGATTTGGTAGAAGAAGAGGAACACATTTTCCGCAGCCAACTTCCTGAGGTCCAAGTGCCTGATAATATCACACTGCCGGAGTTTGTACTTCAGAATGCTGAATCATATGCTGAAAATGTGGCATTTGTGGAAGCCGTGAGTGGAAAGGCTTACACTTACCGCGAAGTTGTGAGAGACATAAATAGATTTTCCAAGGCCTTGTGCTCTCTGAGGTTAAAGAAGGGGCAGGTAGTTATTGTTGTTCTACCCAATGTTGCAGAATATGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCTGGTGTGAATCCAGCCGCTCATATATCAGAAATCAAAAAGCAGGTGGAGGTAGCAGAAGCCAAACTTGTCGTCACGAACAGCGCAAACTTTGAAAAGGTGAAGGAATTAAAGCTACCAGTGATCTTATTAGGGGAGGAACTAATTGAAGGTTCCATTAATTGGCACAAACTGCTTGAAGCTGCAGACCGTGCAGGCAACGATTGTGTTAAAGAAGATATTAAGCAGACTGATTTATGTGCCCTCCCTTTCTCATCAGGCACCACAGGGGTTTCCAAAGGCGTTATGCTAACTCACCGAAATCTAATAGCTAATTTGTGTTCGACTCTCTCCGGTGTCCCAAGAGAAATAGAGGGCAAGGTCACGACGTTAGGCCTCATTCCGTTCTTCCATATTTACGGGATCACTGGAATATGTTGTGCTGCACTTAGAAACAAGGGAAAAGTTGTGGTGATGGGAAGATTTGATCTCAGGACCTTCATTAATGCCCTCATAACACAGGAGGTCACATTTGCTCCAATTGTTCCTCCCATCATCCTGGCTTTGGTTAAGAATCCTATTGTCGAAGAATTTGATCTTAGCGGTCTCAAACTTCAGGCTATCATGACTGCAGCTGCTCCGCTCGCACCCGAAGTTCAGACTGCCTTCGAAAGAAAGTTCCCAGGCGTGGACATTCAAGAGGCATATGGACTAACCGAGCATAGCTGCATCACTCTCAACTATGGAAGTATGGGCAAAGATAATCTCACTGCAAAGAAAAACACAGTTGGCCGCATTCTTCCTAATCTAGAAGTCAAATTCATCGATCCAGACAGCGGAAGGTCTCTGCCAAAGAACACTCCGGGTGAAATCTGTGTAAGAAGCCAGTGTGTGATGCAAGGTTACTACAAAAATGAAGAGGAGACTTCAAGAACGATCGATAACAAAGGCTGGATGCACACTGGGGACATTGGATACATTGACGACGATGGCGACGTGTTTATTGTGGATCGTATTAAGGAATTGATCAAGTACAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAGGCAATCCTCCTTGCTCATCCCTCCATTGAAGATGCAGCTGTGGTGCCGCTGCCAGACGAAGAAGCCGGTGAGATCCCAGCAGCAAGTGTCGTGATGGCTCCGAATTCAAAAGAAACTGAAGATGAAATAATCAAACATGTTGCCTCAAATGTTGCACATTACAAGAAAGTTAGGCTCGTTCATTTTGTGGACACTATCCCGAAGTCGCCTTCTGGGAAAGTTATGAGAAGGTTGATCAAAGAGAAGATGCTCGAAAAGATTCGAGCTGAATCCGCCTCTTAG 1653 45.01 MATCIRDLVEEEEHIFRSQLPEVQVPDNITLPEFVLQNAESYAENVAFVEAVSGKAYTYREVVRDINRFSKALCSLRLKKGQVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEVAEAKLVVTNSANFEKVKELKLPVILLGEELIEGSINWHKLLEAADRAGNDCVKEDIKQTDLCALPFSSGTTGVSKGVMLTHRNLIANLCSTLSGVPREIEGKVTTLGLIPFFHIYGITGICCAALRNKGKVVVMGRFDLRTFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSGLKLQAIMTAAAPLAPEVQTAFERKFPGVDIQEAYGLTEHSCITLNYGSMGKDNLTAKKNTVGRILPNLEVKFIDPDSGRSLPKNTPGEICVRSQCVMQGYYKNEEETSRTIDNKGWMHTGDIGYIDDDGDVFIVDRIKELIKYKGFQVAPAELEAILLAHPSIEDAAVVPLPDEEAGEIPAASVVMAPNSKETEDEIIKHVASNVAHYKKVRLVHFVDTIPKSPSGKVMRRLIKEKMLEKIRAESAS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26579742 26582026 + ClG42_11g0154700.10 Clacu11g1547 262424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1547 550 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Clacu11g1547 550 Gene3D - 13 441 IPR042099 -
Clacu11g1547 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Clacu11g1547 550 Pfam AMP-binding enzyme 37 404 IPR000873 -
Clacu11g1547 550 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Clacu11g1547 550 CDD 4CL 25 534 - -
Clacu11g1547 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 536 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
Clacu11g1547 550 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Clacu11g1547 550 SUPERFAMILY Acetyl-CoA synthetase-like 20 543 - -
Clacu11g1547 550 Gene3D - 442 544 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1274 Clacu-Chr10:25579120 Clacu11g1547 Clacu-Chr11:26579742 5.20E-116 dispersed
Clacu10g1982 Clacu-Chr10:33338508 Clacu11g1547 Clacu-Chr11:26579742 2.30E-101 dispersed
Clacu11g1547 Clacu-Chr11:26579742 Clacu11g1756 Clacu-Chr11:28732720 7.10E-20 dispersed
Clacu11g1547 Clacu-Chr11:26579742 Clacu11g1447 Clacu-Chr11:25488769 1.30E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1547 K01904 - csv:101220731 983.015