Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1548 ATGCAGAGAAAGATGAAGAGAGGTTTGGTGGTGGTGGTGGTGGTGGTTTGTTTATTGGGAAGTAGCTGGGTGGGAAAGGCAGAGGAAGAGAATTTGAAAGAGGGTTGCAGCAGTGATTTCGAGAAAGTGGTGAGTTGCTTCGAGTACGCGACGGGGAAGGCGGCGGGGCCGAGTAAGGAGTGCTGTGACTCAATTGAAGGTATAAAAGAAAGCAAGCCAAAATGCTTGTGTTTCTTCATACAGCAGACTCATAATGGAAATCAGCAGATTAAGAGCTTGGGCATTCAAGAGATTAAGCTTCTTCAGCTTCCTTCTGTTTGTCACTTGAAAAACTCTAGCGTTAGCTATTGCCCTAAGCTTCTGGGGCTACCCGCAAATTCACCCGACGCTGCTATTTTTAGCAATACAACAACACCAGCGACGCCGGCGTCCTCAACGACGACGAGGACAAGTCCCGACGGCAGTGGCGGAAGTAAGATAGTAGCCAATTCTCCGGCCGGACTGATGGCGGTGGCGATGGCGGTCGTGTTTTTCACAGCCTTCCTTTCGCCGATCACGCGTGAGGCGAATTGGGCCGGACAGAGGCCCACTTATACTGCACCATATAAGAAACGAACGAATTCTGGCAGCCCACTTGCGCTCATTCACGCAACAAAACGGCGTTCGTACTCCCTTTTACCCGACGAGCATCGCCGTTTCCGACTGAAAAAAAGATCCACGCAGCTATTCCGAGTCCAAGAACAAGATCTCTCCGTCATCGTCTTCCTGATAGGTCGCAATATGTCTCAGGTTGATAGCAGGAATTCCTCTGCGGCCAAACGTGCTAGAACTGATGGTAGCCGAAGGGAAGATGATTGGACTTGCCCTAGTTGTGGAAACGTCAATTTTTCATTTAGAACAACTTGCAATATGCGCAATTGCACTCAGCCACGTCCTGCTGATCATAATTCTAAATCTGCTGCCAAGCCCATTCAAGCTCCTCAGGGTTACTCCTATTCTGCCCCTTACATGGGGTCAGGTGCACCCTCTTCAATGTATCCTGGTGTACCACCATATGGTTCTTCCATATTCAATGGTTCATCTATACCTCCCTATGATGTGCCATTTTCTGGGGGATCAGCATATCATTACAACTACGGCAGCCGGTTTTCTGCGGGCAGCCCCTACAGACCCTTGCACTTATCTGGGCCTGCACCTTATTCAAGTGGATCTATGATGGGAAATAGTGCAGTGTATGGTATGCCACCCATAATGGATCGCTATGGCATGGCTTTGCCAATGGGCCCTGGTGCCATGGGTCCAAGGCCTGGTTTTTTTCCAGATGATATGTCTCAGAAGAAGGGTGCAGACACTACTCGCGACAATGATTGGGCATGCCCAAAATGTGGAAATATCAACTTCTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCGAAACCTGGGTCACAGGGTTCCAAAAACGACAAAAGTTCTAAACAAAAGACGCCAGAGGGTAGCTGGAAATGTGAGAAATGTAACAACATAAATTATCCATTCCGAACCAAGTGCAACAGACAAAATTGTGGAGCAGACAAGCCAGCGGATTCAGAGAAATCCCCATCACCAGCACAGGATGAAAATGATCAGTGA 1638 48.29 MQRKMKRGLVVVVVVVCLLGSSWVGKAEEENLKEGCSSDFEKVVSCFEYATGKAAGPSKECCDSIEGIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSYCPKLLGLPANSPDAAIFSNTTTPATPASSTTTRTSPDGSGGSKIVANSPAGLMAVAMAVVFFTAFLSPITREANWAGQRPTYTAPYKKRTNSGSPLALIHATKRRSYSLLPDEHRRFRLKKRSTQLFRVQEQDLSVIVFLIGRNMSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGSSIPPYDVPFSGGSAYHYNYGSRFSAGSPYRPLHLSGPAPYSSGSMMGNSAVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKGADTTRDNDWACPKCGNINFSFRTVCNMRKCNTPKPGSQGSKNDKSSKQKTPEGSWKCEKCNNINYPFRTKCNRQNCGADKPADSEKSPSPAQDENDQ 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26587286 26595257 - ClG42_11g0154800.10 Clacu11g1548 262425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1548 545 SUPERFAMILY Ran binding protein zinc finger-like 277 314 IPR036443 -
Clacu11g1548 545 PANTHER RNA BINDING PROTEIN 389 490 IPR034870 GO:0003712(PANTHER)|GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu11g1548 545 SUPERFAMILY Ran binding protein zinc finger-like 493 531 IPR036443 -
Clacu11g1548 545 Gene3D - 444 485 - -
Clacu11g1548 545 Gene3D - 274 314 - -
Clacu11g1548 545 Gene3D - 490 531 - -
Clacu11g1548 545 SMART aai_6 36 117 IPR016140 -
Clacu11g1548 545 SUPERFAMILY Ran binding protein zinc finger-like 448 485 IPR036443 -
Clacu11g1548 545 MobiDBLite consensus disorder prediction 134 158 - -
Clacu11g1548 545 CDD AAI_LTSS 45 109 - -
Clacu11g1548 545 FunFam ranBP2-type zinc finger protein At1g67325-like 275 314 - -
Clacu11g1548 545 SMART zf_4 501 527 IPR001876 -
Clacu11g1548 545 SMART zf_4 284 310 IPR001876 -
Clacu11g1548 545 SMART zf_4 455 481 IPR001876 -
Clacu11g1548 545 MobiDBLite consensus disorder prediction 524 545 - -
Clacu11g1548 545 MobiDBLite consensus disorder prediction 266 285 - -
Clacu11g1548 545 Pfam Probable lipid transfer 29 117 IPR016140 -
Clacu11g1548 545 Pfam Zn-finger in Ran binding protein and others 454 484 IPR001876 -
Clacu11g1548 545 Pfam Zn-finger in Ran binding protein and others 282 304 IPR001876 -
Clacu11g1548 545 Pfam Zn-finger in Ran binding protein and others 499 529 IPR001876 -
Clacu11g1548 545 MobiDBLite consensus disorder prediction 480 508 - -
Clacu11g1548 545 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 35 117 IPR036312 -
Clacu11g1548 545 MobiDBLite consensus disorder prediction 271 285 - -
Clacu11g1548 545 Gene3D - 33 114 IPR036312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1548 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40