Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1553 ATGGCTTCCGCTTGTGCTTCTTCCGCCATTGCGGCTGTGGCAATCTCTTCATCCAGTTCCCAGAAGAATGGGTGCCCCAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGGCTGAGAAACTTAACTTCCGCGGCTGCTGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCGACAGACCTCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCACTTGGTCTTGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTACACTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTTTTGACAAAGATCGGAATATTGAACACTCCGTCATGGTACACCGCCGGTGAATTGGAATACTTCACCGACACCACCACTCTGTTCATAGTGGAACTCATTTTCATTGGTTGGGCCGAAGGTAGACGGTGGGCCGACATCCTCAAACCCGGCTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTCACCGGAACCGACGTCGGATACCCGGGTGGGCTTTGGTTCGACCCGCTCGGGTGGGGAAGCGGATCACCCGAAAAGATCAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTCACACCAAAGTGA 807 56.26 MASACASSAIAAVAISSSSSQKNGCPKASNFLTGKKLRLRNLTSAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26628799 26631099 - ClG42_11g0155300.10 Clacu11g1553 262430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1553 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
Clacu11g1553 268 SUPERFAMILY Chlorophyll a-b binding protein 59 266 - -
Clacu11g1553 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Clacu11g1553 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
Clacu11g1553 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1538 Clacu-Chr3:29002092 Clacu11g1553 Clacu-Chr11:26628799 5.00E-88 dispersed
Clacu04g1276 Clacu-Chr4:26821382 Clacu11g1553 Clacu-Chr11:26628799 9.90E-62 dispersed
Clacu08g1753 Clacu-Chr8:26947822 Clacu11g1553 Clacu-Chr11:26628799 7.10E-50 dispersed
Clacu09g2087 Clacu-Chr9:35658919 Clacu11g1553 Clacu-Chr11:26628799 6.30E-37 dispersed
Clacu10g2166 Clacu-Chr10:34809499 Clacu11g1553 Clacu-Chr11:26628799 9.90E-28 dispersed
Clacu11g1553 Clacu-Chr11:26628799 Clacu11g2093 Clacu-Chr11:31705853 3.30E-23 dispersed
Clacu11g1553 Clacu-Chr11:26628799 Clacu06g1721 Clacu-Chr6:27847543 1.20E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1553 K08908 - csv:101214055 518.079