Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1553 | ATGGCTTCCGCTTGTGCTTCTTCCGCCATTGCGGCTGTGGCAATCTCTTCATCCAGTTCCCAGAAGAATGGGTGCCCCAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGGCTGAGAAACTTAACTTCCGCGGCTGCTGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCGACAGACCTCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCACTTGGTCTTGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTACACTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTTTTGACAAAGATCGGAATATTGAACACTCCGTCATGGTACACCGCCGGTGAATTGGAATACTTCACCGACACCACCACTCTGTTCATAGTGGAACTCATTTTCATTGGTTGGGCCGAAGGTAGACGGTGGGCCGACATCCTCAAACCCGGCTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTCACCGGAACCGACGTCGGATACCCGGGTGGGCTTTGGTTCGACCCGCTCGGGTGGGGAAGCGGATCACCCGAAAAGATCAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTCACACCAAAGTGA | 807 | 56.26 | MASACASSAIAAVAISSSSSQKNGCPKASNFLTGKKLRLRNLTSAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK | 268 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 26628799 | 26631099 | - | ClG42_11g0155300.10 | Clacu11g1553 | 262430 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1553 | 268 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 73 | 258 | - | - | |
Clacu11g1553 | 268 | SUPERFAMILY | Chlorophyll a-b binding protein | 59 | 266 | - | - | |
Clacu11g1553 | 268 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 12 | 263 | IPR001344 | GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro) | |
Clacu11g1553 | 268 | Gene3D | Chlorophyll a/b binding protein domain | 73 | 258 | - | - | |
Clacu11g1553 | 268 | Pfam | Chlorophyll A-B binding protein | 72 | 238 | IPR022796 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g1538 | Clacu-Chr3:29002092 | Clacu11g1553 | Clacu-Chr11:26628799 | 5.00E-88 | dispersed | |
Clacu04g1276 | Clacu-Chr4:26821382 | Clacu11g1553 | Clacu-Chr11:26628799 | 9.90E-62 | dispersed | |
Clacu08g1753 | Clacu-Chr8:26947822 | Clacu11g1553 | Clacu-Chr11:26628799 | 7.10E-50 | dispersed | |
Clacu09g2087 | Clacu-Chr9:35658919 | Clacu11g1553 | Clacu-Chr11:26628799 | 6.30E-37 | dispersed | |
Clacu10g2166 | Clacu-Chr10:34809499 | Clacu11g1553 | Clacu-Chr11:26628799 | 9.90E-28 | dispersed | |
Clacu11g1553 | Clacu-Chr11:26628799 | Clacu11g2093 | Clacu-Chr11:31705853 | 3.30E-23 | dispersed | |
Clacu11g1553 | Clacu-Chr11:26628799 | Clacu06g1721 | Clacu-Chr6:27847543 | 1.20E-62 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1553 | K08908 | - | csv:101214055 | 518.079 |