Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1554 ATGAGAACTCGAACAGGCTTATCTTACCCTCAACTTCAACCAAACACCTTCTCCTCCGACAACCGTCATCGGAAGAGAACACATCATGCCGCTGCCGACCGCCCCTTTTGCCGGAAAAGGAACAAGCTCTCTTCCGACATCAAAACACCCATCTCCGATTTGTTCGATTCCTTGCCGGATGACCTCGTCATTTCTATTCTCTCTAATCTCAGCTCTGCCGCTTCTTCCCCCTCCGATTTCATCAATATCTTGCTAACATGCAAAAGATTGAACAGTTTAGGACTTAATCCGATGGTATTATCAAGAGCTTCTCAGAAGACTTTCGCAATTAGGGCACGAAACTGGACGGAATCCGCTCACCGGTTTCTGAAACAGTGTTCCGATGCCGGGAATGTTGAGGCCTGTTATACACTTGGCATGATTCGTTTCTACTGTTTGCAAAATCGGGGTAGCGGAGCTTCGTTGATGGCGAAGGCGGCGATTTGTTCTCACGCGCCGGCTCTTTACTCCCTCGCCGTTATTCAATTCAACGGCAGCGGCGGATCAAAGAACGATAAGGACCTCCGTGCCGGAGTTGCGCTTTGCGCTCGTGCGGCGTTTCTCGGCCACATCGACGCCCTTAGAGAACTTGGTCATTGCCTTCAAGACGGTTACGGCGTTCGTCAGAACATAACGGAGGGTCGTCGGTTTCTTGTTCAGGCCAACGCGCGTGAACTCGCGGCCGTGCTGTCTTCGGAGGCGGCTTCTTCCGTTGTCGCATCGCGCTCGTGCCTCACGTGGAACCCTCACCCTTCTCACCACCGGCACGTTACGAGCTCGGGATGTCCGTTGTTAAGCGATTTCGGTTGTAATATCCCGGCGCCGGTGGCTCATCCGGCGAGTCAGTTTTTGGCTGAGTGGTTCGAGGCACGTGGGGGGTCGCCTGGGCATGGTCTGAGGCTGTGTTCGCACGTGGGGTGTGGACGTCCGGAGACCAGACGGCATGAGTTTCGTCGGTGTTCCGTTTGTGGTGCCGTTAACTACTGCTCTCGTGCATGTCAGGCGCTGGATTGGAAACTCCGCCACAAGATGGATTGTGTTCCGGTGGAACGTTGGCTTGATGATAACGGTGACGGTGGGGCCGATGTGGCCGATGATATCATGGACGAAAGGGAAAGTAATGAGAATTTTGCGGATTTTGCTCATTCTTCGAGTTCATTTCTCGCGCTGGTGAACTGCAGTTTACTGAGAAGAAATCGCAATTCCTGCAACCGACTTTCGAGGAATATATTAGTAGAAATGAAGTTCGTCATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCACGTTTATGCAGTCAAGGATCGGTGCCAGAAGACGAAGGAGATGTGGAGCTATCCTCTTCGTCCTTACGGATTTTGGACGTTTGAACGCCATAATTCTCAGCTGAAGTGGGACGCACAAATTAGCCAGGCTCCTGTGATATGTGAAGAATATTTGGAAGAGCTCTGA 1530 51.5 MRTRTGLSYPQLQPNTFSSDNRHRKRTHHAAADRPFCRKRNKLSSDIKTPISDLFDSLPDDLVISILSNLSSAASSPSDFINILLTCKRLNSLGLNPMVLSRASQKTFAIRARNWTESAHRFLKQCSDAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSEAASSVVASRSCLTWNPHPSHHRHVTSSGCPLLSDFGCNIPAPVAHPASQFLAEWFEARGGSPGHGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKMDCVPVERWLDDNGDGGADVADDIMDERESNENFADFAHSSSSFLALVNCSLLRRNRNSCNRLSRNILVEMKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHNSQLKWDAQISQAPVICEEYLEEL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26653349 26659913 + ClG42_11g0155400.10 Clacu11g1554 262431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1554 509 Gene3D - 308 363 - -
Clacu11g1554 509 PANTHER MYND DOMAIN-CONTAINING 35 377 IPR044508 -
Clacu11g1554 509 Pfam NADH-ubiquinone oxidoreductase 11 kDa subunit 427 500 IPR035204 -
Clacu11g1554 509 Gene3D Tetratricopeptide repeat domain 98 253 IPR011990 GO:0005515(InterPro)
Clacu11g1554 509 SUPERFAMILY F-box domain 52 111 IPR036047 GO:0005515(InterPro)
Clacu11g1554 509 Pfam MYND finger 320 359 IPR002893 -
Clacu11g1554 509 SUPERFAMILY HIT/MYND zinc finger-like 314 364 - -
Clacu11g1554 509 FunFam Predicted protein 307 364 - -
Clacu11g1554 509 MobiDBLite consensus disorder prediction 1 34 - -
Clacu11g1554 509 MobiDBLite consensus disorder prediction 1 18 - -
Clacu11g1554 509 ProSiteProfiles Zinc finger MYND-type profile. 317 359 IPR002893 -
Clacu11g1554 509 SUPERFAMILY HCP-like 114 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1554 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0371 Clacu-Chr3:4164963 Clacu11g1554 Clacu-Chr11:26653349 4.20E-127 dispersed
Clacu06g1887 Clacu-Chr6:29316285 Clacu11g1554 Clacu-Chr11:26653349 2.30E-126 dispersed
Clacu11g1554 Clacu-Chr11:26653349 Clacu08g1871 Clacu-Chr8:27967412 1.00E-150 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1249 Blo01g00355 . Bda01g02178 . . . . . Cmo04g01930 Cmo18g00683 . Cma18g00696 . Car18g00646 Sed06g1752 Cpe09g00589 Cpe01g01615 Bhi07g01925 Tan04g0046 Cmetu10g1535 . . . . . . . . . . . . . . . Lsi04g00681 . . Cme10g00662 . . . . . . Bma01g00008 . . . . Cma04g01834 . . . . . . . . . . . . Cla11g01339 Cam11g1397 Cec11g1419 Cco11g1416 Clacu11g1554 Cmu11g1375 Cre11g1795 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002511 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 60