Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu11g1559 | ATGGCCGACGATTCCCCCAAGAAGAACATCCTTCAGAGCACCGCTCTTCTCCAGTATATACTGGAAGCCAACGCCTATCCAAGAGAGCATGAACAGTTGAAGGAACTCAGGGAATCCACCTTCGAGAAATTCGATAAGTCCATGAGTTTGATGAATGTACCAGCGGATGAAGGATTGTTTCTATCAATGCTTTTGAAATTGATGAACGCAAAGAAAACGATAGAGATCGGTGTATTCACTGGCTATTCCCTCCTCACCACTGCGCTTGCACTGCCCGCCGATGGCCAGATAACGGCAATTGATGTGAATAGACAATCGTTCGAATTTGGTTTGCCATTTATAAAAAAAGCGGGAGTTGATCATAAGATCAATTTTGTGGAATCTCAGGCATTGGTTGCCTTGAATGACCTCCTCAATGATGGCAAAGAAGAAGATTTTGATTTTGCATTTGTTGATGCCAAAAAATCGGAGTATATTAAATATCATGAGTTGCTTCTAAAACTAGTGAAGGTAGGTGGAGTAATTGTCTATGATAACACTCTATGGTTTGGATCAGTGGCGCTAAGCGATGACGTCGTCCATGAAAAGTTGAAGGAGAACAAACATCATATACAACAATTCAATGCTTTCCTAGTAAATGACATGCGGGTGGAGATAGCTCTCCTCACCATTGGAGATGGTGTCACTCTTTGTAGACGTATCAAATAA | 708 | 41.81 | MADDSPKKNILQSTALLQYILEANAYPREHEQLKELRESTFEKFDKSMSLMNVPADEGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPADGQITAIDVNRQSFEFGLPFIKKAGVDHKINFVESQALVALNDLLNDGKEEDFDFAFVDAKKSEYIKYHELLLKLVKVGGVIVYDNTLWFGSVALSDDVVHEKLKENKHHIQQFNAFLVNDMRVEIALLTIGDGVTLCRRIK | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 26702776 | 26707608 | - | ClG42_11g0155900.10 | Clacu11g1559 | 262436 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu11g1559 | 235 | CDD | AdoMet_MTases | 74 | 177 | - | - | |
| Clacu11g1559 | 235 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 16 | 233 | IPR029063 | - | |
| Clacu11g1559 | 235 | PANTHER | O-METHYLTRANSFERASE-RELATED | 7 | 234 | IPR050362 | GO:0008757(PANTHER) | |
| Clacu11g1559 | 235 | Gene3D | Vaccinia Virus protein VP39 | 1 | 235 | IPR029063 | - | |
| Clacu11g1559 | 235 | Pfam | O-methyltransferase | 25 | 234 | IPR002935 | GO:0008171(InterPro) | |
| Clacu11g1559 | 235 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 9 | 234 | IPR002935 | GO:0008171(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g0633 | Clacu-Chr2:6266575 | Clacu11g1559 | Clacu-Chr11:26702776 | 1.60E-64 | dispersed | |
| Clacu07g1054 | Clacu-Chr7:25069923 | Clacu11g1559 | Clacu-Chr11:26702776 | 9.30E-37 | dispersed | |
| Clacu11g1559 | Clacu-Chr11:26702776 | Clacu11g1561 | Clacu-Chr11:26722420 | 3.10E-81 | dispersed | |
| Clacu11g1558 | Clacu-Chr11:26694717 | Clacu11g1559 | Clacu-Chr11:26702776 | 2.90E-105 | tandem | |
| Clacu11g1559 | Clacu-Chr11:26702776 | Clacu11g1560 | Clacu-Chr11:26712009 | 2.90E-108 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu11g1559 | K00588 | - | csv:101212121 | 379.793 |