Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1560 ATGGTCGTCAGAGTTAGTAGAGTGGCTGTTGTCGGAGTTAGTGGAGTGGCTGTCATTGGAGGTTGCTGGAGTTGTGGTTGGATGTTGTTGGAGTTCGATGCAACTAGTGGTTGTTGGAGTTGGCTGTCAGAGGTGGGTATGAGAGGTGGTTGTCGAAGGGGTGGCTGTTGGAGGGGGTCGCCAAAGTTGGGTGTCGAAGTTGGTCGTCTCGCTTGTGATGAGGTCATGGCGAACCATCAGCACGAGAAGAACATCCTCCGGAGCACCGCTCTTCTCCAGTATATATTGGAAGCCAATTCCTATCCGAGAGAGCATGAACAGTTGAAGGAACTCAGAGAAGCCACCTTCGAGAAGTTTGACAAACACCTGAGTGTGATGAATGTACCGGCGGACGAAGGATTATTTCTATCAATGCTTTTGAAATTGATGAACGCAAAGAAAACGATAGAGATCGGTGTATTCACCGGCTATTCCCTCCTCACTACGGCGCTTGCACTGCCTGCCGATGGCCAGATAACAGCAATTGATGTTGATAGAGAATCATTCGAGTTTGGTTTGCCATTTATCAAAAAGGCGGGAGTTGATCATAAGATCAATTTTGTAGAATGCCAAGGATTGGTTGTCCTCAATGACCTCCTCAACGAGGGCAAAGAAGGAGAGTATGACTTTGCATTTGTGGATGCAAACAAAGCAGAGTATATTAAATATCATGAGTTACTCTTAAAATTGGTAAAGGTAGGTGGAGTAATTGCTTATGACAACACCCTGTGGTTTGGATCGGTCGCATTGAGCGATGACGTCGTCCTTGAAAATTTGAAGGAGGGTAGAAGTCGTACACGAGAACTCAATGCTTTTCTAGTTAACGACTCACCGGTAGAGATAGCTCTTCTCTCCGTTGGAGATGGCTTCACTCTCTGCCGACGTATCAAATAG 933 46.41 MVVRVSRVAVVGVSGVAVIGGCWSCGWMLLEFDATSGCWSWLSEVGMRGGCRRGGCWRGSPKLGVEVGRLACDEVMANHQHEKNILRSTALLQYILEANSYPREHEQLKELREATFEKFDKHLSVMNVPADEGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPADGQITAIDVDRESFEFGLPFIKKAGVDHKINFVECQGLVVLNDLLNEGKEGEYDFAFVDANKAEYIKYHELLLKLVKVGGVIAYDNTLWFGSVALSDDVVLENLKEGRSRTRELNAFLVNDSPVEIALLSVGDGFTLCRRIK 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26712009 26717335 - ClG42_11g0156000.10 Clacu11g1560 262437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1560 310 PANTHER O-METHYLTRANSFERASE-RELATED 81 309 IPR050362 GO:0008757(PANTHER)
Clacu11g1560 310 Pfam O-methyltransferase 101 309 IPR002935 GO:0008171(InterPro)
Clacu11g1560 310 CDD AdoMet_MTases 149 252 - -
Clacu11g1560 310 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 84 309 IPR002935 GO:0008171(InterPro)
Clacu11g1560 310 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 90 308 IPR029063 -
Clacu11g1560 310 Gene3D Vaccinia Virus protein VP39 73 310 IPR029063 -
Clacu11g1560 310 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1558 Clacu-Chr11:26694717 Clacu11g1560 Clacu-Chr11:26712009 1.30E-92 dispersed
Clacu11g1559 Clacu-Chr11:26702776 Clacu11g1560 Clacu-Chr11:26712009 2.90E-108 tandem
Clacu11g1560 Clacu-Chr11:26712009 Clacu11g1561 Clacu-Chr11:26722420 6.70E-76 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1560 K00588 - csv:101212121 363.999