Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1567 ATGGACAAAAATCTGTTGTTTCTAGTCTTGATTTTTCACTTTCAGGTTGCGTTTAGGGTTTTAGCCCTCTCGCCGGATGGTCTCTCGCTTCTCTCTCTGAAGTCGGCGATTGACCAGTCGCCGGATTCCTCTGTTTTCTCCGATTGGAACGAGGATGACTCCACGCCTTGCCGATGGTCTGGCATTTCTTGCATGAACGTTTCCGGTGACTCGCGAGTCGTTGGAATTGCTCTCTCTGGTAAGAATCTCCATGGCTACATTCCTTCTGAACTCGGCTCGCTTGTCTATCTCCGGCGATTGAACCTCCATAACAATAATCTCTACGGCTCGATACCTGAACAGTTGTTTAATGCTACCTCATTACATAGCCTATTTCTCTACAGTAATAATCTCTCCGGTCCTTTTCCCCCTTCGATCTGCAACATTCCGAGGCTTCAAAACCTCGATCTCTCCAACAATTCTCTCGCCGGACCACTACCCGACGAATTGAAGAATTGTAAACAATTGCAGCGATTAATACTCGCTAGAAATCAATTCGACGGAGAAATACCGTCTGGTGTTTGGTCTGGGATGGATAATTTACTTCAACTCGATCTCTCATCCAACGATTTCAGCGGATCGATTCCGGAGGATCTAGGGCAACTGAAGACACTTTCCGGTACGCTCAACCTCTCCTTCAATCATTTATCAGGTAAAATCCCGAAAACTCTCGGAGATTTGCCGGTAACGGTGAGTTTCGACCTCCGGAGCAACAATTTAAGCGGAAGCATACCTCAGACAGGTTCTTTCGCAAATCAAGGACCGACTGCATTTCTCAACAATCCCGAGTTATGTGGATTTCCTCTTCAAAAATCTTGTGAGAGTTCAGAACGTGGCTCACCGGGAAATCCGGATTCCAAGCCATCTTACATTTCCCCTAGAAAAGGATTGAGCGCCGGATTAATCATTCTCATCTCTGCCGCTGACGCCGCCGGAGTAGCATTTATCGGCTTGGTAATAGTATACATATATTGGCGACGGAAGGACAATTCGAACGGCTGTAGCTGTACGGCGAAAAGAAAATTCGGTGGGAATCAGAAAGACAATCTCTGCAATTTTCCTTGTATGAATGGACATGATAAGAATGAGGAGTCGGAAATGGAGGAACCGGAGAACAGTGAGAGAAGCAGAGAGGAAGGAGGGCTGGTGGCCGTAGACAAAGGCTTTACGTTCGAACTCGACGAGTTGCTGAGAGCGTCGGCGTATGTGCTGGGAAAGAGTGGACTGGGAATTGTGTACAAAGTGGTCCTCGGAAATGGGATTCCGGTGGCTGTACGGCGGTTGGGGGAAGGCGGAGAACAGAGGTATAAGGAGTTTGCGGCGGAGGTGCAGGCGATTGGAAGGGTAAAGCATCCTAATATTGTGAAACTGAGAGCTTATTATTGGGCGCCGGATGAGAAGCTTCTGATCAGTGATTTTATCTCCAATGGGAACTTGGCCTCTGCTCTTCGCGGGAAGAACGGGCAGGCATCTTCAATCCTTTCATGGGCAACAAGATTACGAGTAGCCAAGGGAACCGCCAGAGGATTAGCCTATCTACACGAATGCAGCCCAAGAAAATTCGTCCATGGCGACATCAAGCCCTCCAACATTCTCCTCGACAACGATTTCCATCCCCACATCTCCGACTTCGGCCTCAACCGCTTGATCAGCATCACCGGCAACAACCCCTCCTCCTCAGGCGGCCTCATCGGTGGCGCCTTCTCCTACCTCAAGTCCGTCCAAACCGACCGCACCAACAACTACTGCGCCCCGGAGGCCCGAGCCCCCGGCGGCCGGCCCACCCAAAAATGGGACGTCTATTCCTTCGGCGTCATGGTCCTCGAATTACTCACCGGAAAGTCGCCGGAGCTTTCCCCGAACACGTCGACTTCTTTGGAGATTCCGGATTTGGTGAGATGGGTTAGAAAAGGGTTTGAAGAAGCAAAGCCATTGTCGGAATTGGTGGACCCTGCTCTGTTACAAGAAGTACATGCTAAGAAAGAAGTGCTGGCCGTATTCCACTTGGCGCTCGCTTGTACAGAGAGCGACCCGGAAATTCGGCCCAGAATGAAGACGGTGTCGGAGAATTTCGAGAGGATTGGATCGTGA 2130 49.95 MDKNLLFLVLIFHFQVAFRVLALSPDGLSLLSLKSAIDQSPDSSVFSDWNEDDSTPCRWSGISCMNVSGDSRVVGIALSGKNLHGYIPSELGSLVYLRRLNLHNNNLYGSIPEQLFNATSLHSLFLYSNNLSGPFPPSICNIPRLQNLDLSNNSLAGPLPDELKNCKQLQRLILARNQFDGEIPSGVWSGMDNLLQLDLSSNDFSGSIPEDLGQLKTLSGTLNLSFNHLSGKIPKTLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPELCGFPLQKSCESSERGSPGNPDSKPSYISPRKGLSAGLIILISAADAAGVAFIGLVIVYIYWRRKDNSNGCSCTAKRKFGGNQKDNLCNFPCMNGHDKNEESEMEEPENSERSREEGGLVAVDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFAAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGKNGQASSILSWATRLRVAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFHPHISDFGLNRLISITGNNPSSSGGLIGGAFSYLKSVQTDRTNNYCAPEARAPGGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSELVDPALLQEVHAKKEVLAVFHLALACTESDPEIRPRMKTVSENFERIGS 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26797546 26802404 - ClG42_11g0156700.10 Clacu11g1567 262444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1567 709 MobiDBLite consensus disorder prediction 285 304 - -
Clacu11g1567 709 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 167 707 IPR046959 -
Clacu11g1567 709 FunFam Leucine-rich repeat receptor-like protein kinase 193 288 - -
Clacu11g1567 709 SUPERFAMILY L domain-like 28 283 - -
Clacu11g1567 709 CDD STKc_IRAK 417 707 - -
Clacu11g1567 709 SMART serkin_6 415 707 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1567 709 SUPERFAMILY Protein kinase-like (PK-like) 416 702 IPR011009 -
Clacu11g1567 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1567 709 Gene3D Phosphorylase Kinase; domain 1 403 486 - -
Clacu11g1567 709 Pfam Leucine Rich Repeat 221 240 IPR001611 GO:0005515(InterPro)
Clacu11g1567 709 Pfam Leucine Rich Repeat 193 215 IPR001611 GO:0005515(InterPro)
Clacu11g1567 709 MobiDBLite consensus disorder prediction 286 300 - -
Clacu11g1567 709 Pfam Protein kinase domain 416 643 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1567 709 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 189 - -
Clacu11g1567 709 ProSiteProfiles Protein kinase domain profile. 411 707 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1567 709 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Clacu11g1567 709 Gene3D Transferase(Phosphotransferase) domain 1 487 709 - -
Clacu11g1567 709 Gene3D Ribonuclease Inhibitor 25 186 IPR032675 -
Clacu11g1567 709 Gene3D Ribonuclease Inhibitor 187 288 IPR032675 -
Clacu11g1567 709 FunFam Leucine-rich repeat receptor-like protein kinase 394 486 - -
Clacu11g1567 709 FunFam Os07g0541700 protein 492 574 - -
Clacu11g1567 709 Pfam Leucine rich repeat 97 155 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0085 Clacu-Chr4:1898113 Clacu11g1567 Clacu-Chr11:26797546 6.60E-94 dispersed
Clacu05g1185 Clacu-Chr5:10929788 Clacu11g1567 Clacu-Chr11:26797546 2.20E-59 dispersed
Clacu11g0407 Clacu-Chr11:3813284 Clacu11g1567 Clacu-Chr11:26797546 2.50E-48 dispersed
Clacu11g1088 Clacu-Chr11:13651283 Clacu11g1567 Clacu-Chr11:26797546 1.10E-89 dispersed
Clacu11g1567 Clacu-Chr11:26797546 Clacu01g1511 Clacu-Chr1:27209011 1.10E-46 dispersed
Clacu11g1567 Clacu-Chr11:26797546 Clacu05g2440 Clacu-Chr5:32604044 3.50E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73979 PF00069 Pkinase 6.90E-33 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1567 - - - 0.0