Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1569 ATGGATGTTCCCGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTGCATGGAGAAATGTTCAAGAAACTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATCCGGGCTTTATGTTCATTACATGTAGCTCTTGAGAAGGCTAAGAATACTCTTCAGCATTGCTCAGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTCGAAGATATTGTTTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGAACACTGTTTTCTTACTTGATCCACTTGAGAAACAAATTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCTATAATGAGCTGGAGCATTTTCATCAGGCTGCCACGAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTCAAGAGAATTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGGCAGATGACACCGATTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTCTTCGGTGTTCTCTTGAGGATAATGGACTTGCAGCGAATGGTAAAGTTTTTGAACATCAGCTTTCAAAGCTTAGTTCTTTTAATTTCAAGCCAAATTATAGGATATCAGGGCAGATGCCTCTTCCACCTGAGGAATTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTTATAATTGATTCTGGGCAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGTGATGGTCATAAAACCTGCCCAAAGACTCAACAGAAGCTCTCGCACCTGTCCTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAATTGGTGTGAACATAACGGAGTTCCTATCCTGGATGGTCCACCAAAATCACTTGATCTGAATTATTGGAGACTTGCATTGTCTGATTCTGAGTCTGTAAAATCAAAATCTGTGGACAATGTTGGCTCTCACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAAGGTTGCTGAAGAAAATGAAGCAGATGATAATACATACACGGAGGAGTCAGCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGGCAGTATTGACTGAAGAGGGAGACTTGAGAAAAAAATGTAAGGTTGTGGAGCAGATAAGACTTTCATTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAATGCTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAATAGGGAAATGATGATAGCGGCAGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCGAATTTACATGGACCTGCAACGGCCCTATATTTGAACCTTTCCTGCCTGGAAGATGCCAAACCTATCATTAGTTCGAGTACAGCCGTTCCTTTCCTGATCCAGCTGCTTACTTGTAATGGTGAATCCCAAACCAAGCTCGATGCGCTTCATACCCTTTATAACCTTTCAACCACGCCGTCCATCATTCCTGTTCTTCTTTCCGCTGGTATTGTCGGTGGACTTCAATCCTTTATTGCAGCTCCTAGCGACAGCATGTGGACAGAGACTTCTTTAGCTATCTTAATGAACTTAGCTTCAAGCCAGTTAGGGATAGAAGAAATAACTTCAGCTCCAGAGCTTATCAGTGGGTTGGCAGCAATCGTGGATGCTGGCGAACGTGCCGAGCAGGAGCAAGCTGTATCATGTTTGTTGATTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTCTTACAGGAAGGAGTGATTCCGGGATTGGTTGCGATTACGGTAAATGGAACTTCAAGAGGGAAAGTAAAAGCTCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGATACTGATATCATTCAGCAGCGAGACGGAAATAGCGACACGGCCATGGCTGCTCCAGATTCTAAGCCACTTTGCAAATCAATGTCAAAGAAAAAGATGGGGAAAGCACTAAGCTTTTTTGCGAGGAGCAAACGATTTTCACTATACCAATGTTGA 2304 41.67 MDVPEVEEIFFAAGDAKLHGEMFKKLAAIYGQVMSIFPSLEAARPRSKTGIRALCSLHVALEKAKNTLQHCSESSKLYLAITGDAVLAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKNTVFLLDPLEKQIGDDIIALLLQERKFDDSNGYNELEHFHQAATKLGITSSKAALTERRALKRIVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELADDTDSQGGSTPCSPTLRCSLEDNGLAANGKVFEHQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQKLSHLSLTPNYSVKGLIANWCEHNGVPILDGPPKSLDLNYWRLALSDSESVKSKSVDNVGSHTLKEVKVVPLEESGTIKVAEENEADDNTYTEESADFITLESCVNFMAVLTEEGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMEFLTLALIEENADAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVPFLIQLLTCNGESQTKLDALHTLYNLSTTPSIIPVLLSAGIVGGLQSFIAAPSDSMWTETSLAILMNLASSQLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLILCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDIIQQRDGNSDTAMAAPDSKPLCKSMSKKKMGKALSFFARSKRFSLYQC 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26829994 26833971 + ClG42_11g0156900.10 Clacu11g1569 262446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1569 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Clacu11g1569 767 Pfam U-box domain 281 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu11g1569 767 PANTHER U BOX DOMAIN-CONTAINING 22 714 - -
Clacu11g1569 767 SUPERFAMILY RING/U-box 274 355 - -
Clacu11g1569 767 CDD RING-Ubox_PUB 281 333 IPR045210 -
Clacu11g1569 767 SMART Ubox_2 283 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu11g1569 767 SUPERFAMILY ARM repeat 439 697 IPR016024 -
Clacu11g1569 767 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Clacu11g1569 767 SMART arm_5 506 544 IPR000225 GO:0005515(InterPro)
Clacu11g1569 767 SMART arm_5 545 586 IPR000225 GO:0005515(InterPro)
Clacu11g1569 767 SMART arm_5 460 504 IPR000225 GO:0005515(InterPro)
Clacu11g1569 767 Gene3D - 401 723 IPR011989 -
Clacu11g1569 767 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1777 Clacu-Chr6:28307531 Clacu11g1569 Clacu-Chr11:26829994 1.20E-11 dispersed
Clacu08g1090 Clacu-Chr8:20885007 Clacu11g1569 Clacu-Chr11:26829994 2.10E-15 dispersed
Clacu08g1877 Clacu-Chr8:28027309 Clacu11g1569 Clacu-Chr11:26829994 7.40E-281 dispersed
Clacu10g1808 Clacu-Chr10:31752453 Clacu11g1569 Clacu-Chr11:26829994 5.80E-11 dispersed
Clacu11g0750 Clacu-Chr11:7341749 Clacu11g1569 Clacu-Chr11:26829994 6.30E-34 dispersed
Clacu11g1569 Clacu-Chr11:26829994 Clacu03g0161 Clacu-Chr3:1727454 1.50E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1569 - - - 0.0