Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1572 ATGTTTTGTAGCTCTCCCACTCCTTCTCCCCCTACTCTCTCTTCAGTCCCCTACTCCACCGGCGACGTTCACCTCTATCGGCCATTACCGCCGCTACTTGAAGAAAAGACTATGAAGCTGACTCCAAGGGAAGTGGAAAAACTAGGTCTGCATAATGCGGGATATTTAGCACAGAAGCGTCTTGCTCGTGGCTTGAGGCTGAATTACGCTGAAGCTGTAGCCCTTATTGCCTCACAGATTTTGGAGTTCGTTCGCGATGGCAATTGCAGCGTGGCAGAATTGATGGAATTAGGGCGAGAACTCTTAGGGAGGAGACAAGTTCTTCCAAGTGTTCCACATCTTTTGAATTATATTCAGGTTGAAGGAACTTTTCCTGATGGGACTAAGTTAATAACTGTTCATAAGCCCATTGAGTCAGAGGTTGGGAATCTTGAGCGAGCTTTGCAGGGTTCTTTTCTTCCAGTTCCTTCGCTAGACAAGTTCCCTTTGATGGAAGATAGTAAAGTGCCTGGTGAGATTATCTGTGATGATAAAAAGATTGCAATTAATGTTGGACGGAAAGCTGTAATACTCAGTGTAAAAAATATGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCACTTTATTGAGACAAATCCTTCTTTAGTTTTTGATCGATCAAAAGCTTATGGCATGCGCCTCAACATATTAGCAGGATCAGCCACACGATTTGAGCCAGGGTGTCCAAAAGATGTCACACTTGTAGCTATTGGTGGTAACCAAGTTATCAGAGGGGGAAACTGCATCGCCGATGGTCCAGTTGATAAATCCAAATTGAAAGAAGTGATGGAAGCTGTGCATGCAAGAGGATTTGGACATTTGGAAGAAAAAGATGCTAGAGAAGGTGTTACTGGAGGGGAGGATGAGATATTCACCACCAGAGTTCTTCGTGAGGAGTATGCCAACCACTATGGTCCCACAACTCGCGACAAAGTTCGTCTTGGTGATACAGATTTATATGCTGAAATCGAACATGATTTCTGTGTTTATGGGGATGAATGTATGTTTGGAGGTGGAAAGGTTATCAGAGATGGAATGGGCCAGGCGTGTGGGCATCCACCGGCTTCATCTCTTGATACCGTAATAACCAATGCAGTGATTATTGATTATACTGGAATTTTCAAGGCAGATATTGGTATCAAAGATGGCTTCATTATTTCACTTGGAAAAGCCGGCAATCCTGATATCATGGACAGAGTTTGTCCTAATCTGATTATTGGGGCTAATACTGAGGTTATTTCTGGAGAAGGATTGCTTGTTACTTCAGGGGCAATAGATTGCCATGTCCACTACATATGCCCTCAAATGGTACATGAAGCAATATCGAGTGGCATCACGACGCTGGTGGGAGGTGGAACCGGGCCAGCTGAAGGAAGTTGTGCTACTACTTGCACACCATCCCCAGCGCTGATGAAGATGATCCTCCAATCAACTGATAACCTCCCCCTGAACTTTGGCTTTACAGGAAAAGGGAACACCTCGAAGCCAGATGAGATACATGAAATTATAAGGGCCGGAGCTATGGGACTGAAGCTACATGAAGACTGGGGATGCACTCCTGCTGCAATTGACAGTTGTTTAGCTGTGGCTGAAAAATATGACATTCAGGTTAATATTCACACTGACACCTTGAATGAATCTGGATTTGTTGAAGATACGATTGCAGCTTTTAAAGGAAGAACTATACACACATACCACACTGAAGGAGCTGGAGGCGGTCATGCACCGGATATCATCAAAGTGTGCAGTGTGAAAAATGTGCTTCCTTCATCAACTAATCCAACACGACCATTCACAACGAATACTATAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTTGATCCCAATATTGAAGAAGATGTAGCTTTTGCTGAATCAAGGATAAGGAAGGAAACAATTGCTGCAGAAGATATTTTGCATGATATGGGAGCAATTAGTATGATATCTTCTGATTCACAGGCTATGGGCCGCATAGGAGAGGTGATTAGCAGAACATGGCAAACTGCCCACAAGATGAAGTTGCAAAGGGAACCGCTTGATTCCACAAAGCCAGACGACGACAACCTTCGGATCAAGCGATATGTTTCCAAATATACCATCAATCCAGCCATAGCAAATGGGATTTCTGAATATGTTGGTTCAGTAGAGGTAGGGAAATGGGCTGATCTTGTTCTATGGAAACCGTCCTTTTTTGGGACAAAACCAGAAAAGGTGTTGAAAGGTGGTATAATTGCATGGGCAAACATGGGTGATCCAAACGCAAGCATTCCTACACCTGAACCGGTACTGATGAGGCCAATGTACGGATCCATGGGAAAGGCAGCAAGTGGCAGCTCAATTGCCTTCGTCAGTAAGGCAGCATTTAACGCGGGAGTTAAGGACATGTATGGACTAAACAAGAGAGTTGTAGCAGTGAGCAACACTAGGAAACTTACTAAACTAGACATGAAATGGAATGATGCCCTTCCAAACATCCAAGTGGATCCTGATCACTATGACGTGAAAGTAGATGGCGATAGTGGAAAATCGAAATCAATATCTGAATATTGTGTATTTCAAAATGAACTGGGTAAATCAATTTCAAGGGATTTGGCTGTGATGGAGGTTCCTCCAAAGTGGTCGTCTCCATTGGAAATCTCAAGTCTTGCCTTTGGTTAA 2709 43.78 MFCSSPTPSPPTLSSVPYSTGDVHLYRPLPPLLEEKTMKLTPREVEKLGLHNAGYLAQKRLARGLRLNYAEAVALIASQILEFVRDGNCSVAELMELGRELLGRRQVLPSVPHLLNYIQVEGTFPDGTKLITVHKPIESEVGNLERALQGSFLPVPSLDKFPLMEDSKVPGEIICDDKKIAINVGRKAVILSVKNMGDRPIQVGSHYHFIETNPSLVFDRSKAYGMRLNILAGSATRFEPGCPKDVTLVAIGGNQVIRGGNCIADGPVDKSKLKEVMEAVHARGFGHLEEKDAREGVTGGEDEIFTTRVLREEYANHYGPTTRDKVRLGDTDLYAEIEHDFCVYGDECMFGGGKVIRDGMGQACGHPPASSLDTVITNAVIIDYTGIFKADIGIKDGFIISLGKAGNPDIMDRVCPNLIIGANTEVISGEGLLVTSGAIDCHVHYICPQMVHEAISSGITTLVGGGTGPAEGSCATTCTPSPALMKMILQSTDNLPLNFGFTGKGNTSKPDEIHEIIRAGAMGLKLHEDWGCTPAAIDSCLAVAEKYDIQVNIHTDTLNESGFVEDTIAAFKGRTIHTYHTEGAGGGHAPDIIKVCSVKNVLPSSTNPTRPFTTNTIDEHLDMLMVCHHLDPNIEEDVAFAESRIRKETIAAEDILHDMGAISMISSDSQAMGRIGEVISRTWQTAHKMKLQREPLDSTKPDDDNLRIKRYVSKYTINPAIANGISEYVGSVEVGKWADLVLWKPSFFGTKPEKVLKGGIIAWANMGDPNASIPTPEPVLMRPMYGSMGKAASGSSIAFVSKAAFNAGVKDMYGLNKRVVAVSNTRKLTKLDMKWNDALPNIQVDPDHYDVKVDGDSGKSKSISEYCVFQNELGKSISRDLAVMEVPPKWSSPLEISSLAFG 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26849384 26861717 + ClG42_11g0157200.10 Clacu11g1572 262449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1572 902 NCBIfam urease subunit gamma 38 139 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Clacu11g1572 902 PANTHER UREASE 38 864 IPR050069 -
Clacu11g1572 902 NCBIfam urease subunit alpha 310 866 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Clacu11g1572 902 NCBIfam urease subunit beta 169 269 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Clacu11g1572 902 CDD Urease_beta 168 268 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Clacu11g1572 902 SUPERFAMILY Urease, gamma-subunit 38 140 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
Clacu11g1572 902 SUPERFAMILY Metallo-dependent hydrolases 437 862 IPR032466 -
Clacu11g1572 902 PRINTS Urea amidohydrolase (urease) protein signature 735 748 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Clacu11g1572 902 PRINTS Urea amidohydrolase (urease) protein signature 642 658 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Clacu11g1572 902 PRINTS Urea amidohydrolase (urease) protein signature 709 724 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Clacu11g1572 902 PRINTS Urea amidohydrolase (urease) protein signature 603 620 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Clacu11g1572 902 Pfam Urease subunit beta-alpha linker domain 268 299 IPR040881 -
Clacu11g1572 902 Gene3D Urease, beta subunit 186 306 IPR036461 -
Clacu11g1572 902 Pfam Urease, gamma subunit 38 137 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Clacu11g1572 902 ProSitePatterns Urease active site. 625 641 IPR017950 GO:0009039(InterPro)
Clacu11g1572 902 CDD Urease_gamma 41 137 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Clacu11g1572 902 Gene3D - 437 856 - -
Clacu11g1572 902 Pfam Urease beta subunit 170 266 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Clacu11g1572 902 ProSiteProfiles Urease domain profile. 437 901 IPR017951 GO:0009039(InterPro)|GO:0016151(InterPro)
Clacu11g1572 902 SUPERFAMILY Urease, beta-subunit 169 297 IPR036461 -
Clacu11g1572 902 FunFam Urease subunit alpha 41 161 - -
Clacu11g1572 902 ProSiteProfiles Rhodanese domain profile. 754 772 IPR001763 -
Clacu11g1572 902 SUPERFAMILY Composite domain of metallo-dependent hydrolases 717 787 IPR011059 GO:0016810(InterPro)
Clacu11g1572 902 Pfam Amidohydrolase family 434 761 IPR006680 GO:0016787(InterPro)
Clacu11g1572 902 CDD Urease_alpha 308 856 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Clacu11g1572 902 SUPERFAMILY Composite domain of metallo-dependent hydrolases 308 485 IPR011059 GO:0016810(InterPro)
Clacu11g1572 902 Hamap Urease subunit alpha [ureC]. 307 901 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Clacu11g1572 902 Pfam Urease alpha-subunit, N-terminal domain 309 427 IPR011612 -
Clacu11g1572 902 Gene3D Urease, subunit C, domain 1 307 788 IPR011059 GO:0016810(InterPro)
Clacu11g1572 902 FunFam Urease 186 304 - -
Clacu11g1572 902 Gene3D - 41 161 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1572 K01427 - - csv:101209590 1357.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g1572 Clacu-Chr11:26849384 Clacu11g1573 Clacu-Chr11:26865679 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49