Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1574 ATGTGGGTTCTCTCTACGCGTCTATCTAGGACTCCGCTCGCTTGCGCGACTCTCTTCGATTCATACCGCTCTTCATCCAATCCTACTTTACAGATTACAGGTCGAGGCTCGGATTCAATTTTTTCAATCTCCCCTAGGGTTTTCTTTGGGAGCTATTGGGTGAGGTTTGGTATTTTGATGGCAGCGGGGAGAATGGGGGGTTATCGCGACTATGATATGAAGGACCGGGATTCCAGTTTTGATGTTTCGGGAGTAACTGCGAAAGAAGGATATGAACGGGGGCGGAGCGGTAACCGTGAAAGCAATAAAAGTCGAGGTCGGGATGTTAGAGACAGAATTAGGGTCCGGCAAAAGGATATCAAGGAGAGGGAAGCGGGTAATGGTAGTCTACGATCTTCGAGTAGAAGTGATTCTGGAAGCAGTGGTGGTATTGCTTCTCACGGGTTGAAGCAAAAGGTTTTGCTTGTCAGGACAATGGATAGGGAGCCGGGCGAGCTATCCAGTGAGAGTGGATCTGATGATGCCACTGAGTCCGGATTACGATTTAAAAATAGTGAGTCGGCAAAGGTGGTGGAGAATGGTATTCATTCTCCACTAGAGAAGAAGAGGAAGTTCTCACCAATAGTTTGGGACAGAGACGATAAGGAAGATGCCATTTCCACAAGAAATAAGGTTGCCAAGGCTGCGACTGCTTCATCTGTGCCGTCACCAAAGGAGCAGAAGCAGTCTCCTAATGCAACGTCGGACACTCTTGATGCTATGCCAACGGCAGGTGGTAGAAGTAAGGATCTGGAGTACTTGCAACCTTCCTCTCTTGTTGAACCGTCTGCTGGGGGCCTTGGATCAGATGAATTCTCCGCAAGTGGTTCACCAATGATGCCATCTTCTGCTTTGCTTAGGAAACCATGGCAGAATGATCTTGAAGCAGAAAATTTTGGGGACGATGATTATGCTCCCACAAGGAACATTTCATCCTCTAGATGGGCTGCTGGAAATAACACTCCTGGTGATGAAGGTGAAATTTTAGACGAGGAAATGCCTAAAAGACGAAAGACCACACCAATTTCTGAGTCCTTGGAGGGCATCAAAGTACAAAGAAAATCATTAACTCCAGAGATTGGGGAGATAATGAGACAAGGCTCTGAAGCAGGGACAAGGTCATCTGAATCGACGGAACGTGGTGATCGGTCTCGATCATCTAGTGCAAATCATTACCTTGGTAATGATTTTGAGAAGGACGAAGGCATGGATCTTGGTGATGATTTTCGTAGAATGGATACTAGCAGTAGCAGGTTGGATACTGATTCTGAGGATGAGACAGAATCTCCCGAGGAAGCAGAGCCTAGTGGCCCTCCTCCCCAACGAAGTGTAAATATGCTTCAGGGCTGTAGAAGTGTTGATGAATTTGAGAGGTTGAATAAGATCGATGAAGGAACTTATGGTGTTGTGTATAGAGCCAGAGACAAGAAGTCAGGGGAAATTGTTGCGTTGAAGAAGGTAAAAATGGAAAAGGAACGAGAAGGTTTTCCCATGACTTCTTTGAGAGAAATAAACATTCTTCTATCTTTTCATCACCCTTCAATTGTTGATGTAAAAGAAGTGGTGGTGGGCAGTAGTCTCGATAGCATTTTTATGGTAATGGAGTACATGGAGCATGATCTAAAAGCACTCATGGAGACAATGAAGCAGCCATTTAGTCAAAGTGAAGTCAAATGTCTGATGCTTCAGTTACTGGAGGGTGTTAAATACCTTCACGATAATTGGGTGCTCCATAGGGATTTAAAAACATCAAATTTACTTATGAATAACCAGGGAGAGTTGAAGATCTGTGATTTTGGACTAGCTCGGCAATATGGGAGCCCCTTGAAAACGTATACACATATGGTTGTTACTCTTTGGTACAGGGCACCTGAACTTTTATTGGGAACAAGACAGTATTCTACAGCAATTGACATGTGGTCCTTGGGTTGTATTATGGCTGAATTATTGTCAAAGCAACCACTGTTTAATGGAAAAACTGAAGTCGATCAACTTGACAAGATATTCCGAACTCTAGGGACACCCAATGAAACAATTTGGCCTGGGTTTTCCAAGCTTCCAGGAGTAAGGGTGAACTTTGTTAAGCACCAGTACAACTTATTGCGTAAGAAATTCCCAGCGACATCATTTACCGGTTCGCCAGTTCTTTCTGATTCAGGATTTGATTTGTTGAACAAACTTCTAACTTACGATCCTGAGAAGAGAATTACAGCTGAGGCCGCTCTTAATCATGAATGGTTCTCAGAAGTTCCTCTTCCAAAGTCTAAAGAATTCATGCCTACTTTTCCTGCTCAGCATGCTCAGGACAGGCGTTTACGGAGAGTAATGAAGAGTCCAGACCCCTTAGAAGAGCAACGCAGAAAGGAGTTGCAGCAAGGGGAATTGGGAACATCTGGCTTCTTGACGTCAATTCTTCTCCTCTGGTCATCGTATAGAAAATGCTTCACTGACACGGCTTGCATGGCAAGAGATGGTTGGTGGGAAGGGGAGGGCGATCTTTGCTTCTCGTTGGCGAAGAATTTGACAGTTACGTTAGTTTTTCAAAGTATCAAAGCTAGCAGGTTGAGGAGCCTACCTGCATTGCTCTGGAAGTTATTAACTTAG 2643 44.57 MWVLSTRLSRTPLACATLFDSYRSSSNPTLQITGRGSDSIFSISPRVFFGSYWVRFGILMAAGRMGGYRDYDMKDRDSSFDVSGVTAKEGYERGRSGNRESNKSRGRDVRDRIRVRQKDIKEREAGNGSLRSSSRSDSGSSGGIASHGLKQKVLLVRTMDREPGELSSESGSDDATESGLRFKNSESAKVVENGIHSPLEKKRKFSPIVWDRDDKEDAISTRNKVAKAATASSVPSPKEQKQSPNATSDTLDAMPTAGGRSKDLEYLQPSSLVEPSAGGLGSDEFSASGSPMMPSSALLRKPWQNDLEAENFGDDDYAPTRNISSSRWAAGNNTPGDEGEILDEEMPKRRKTTPISESLEGIKVQRKSLTPEIGEIMRQGSEAGTRSSESTERGDRSRSSSANHYLGNDFEKDEGMDLGDDFRRMDTSSSRLDTDSEDETESPEEAEPSGPPPQRSVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKSGEIVALKKVKMEKEREGFPMTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKALMETMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLMNNQGELKICDFGLARQYGSPLKTYTHMVVTLWYRAPELLLGTRQYSTAIDMWSLGCIMAELLSKQPLFNGKTEVDQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFSEVPLPKSKEFMPTFPAQHAQDRRLRRVMKSPDPLEEQRRKELQQGELGTSGFLTSILLLWSSYRKCFTDTACMARDGWWEGEGDLCFSLAKNLTVTLVFQSIKASRLRSLPALLWKLLT 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26883467 26888416 - ClG42_11g0157400.10 Clacu11g1574 262451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1574 880 ProSiteProfiles Protein kinase domain profile. 469 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1574 880 FunFam Cyclin-dependent kinase G-2 552 791 - -
Clacu11g1574 880 MobiDBLite consensus disorder prediction 129 145 - -
Clacu11g1574 880 Gene3D Transferase(Phosphotransferase) domain 1 552 791 - -
Clacu11g1574 880 SMART serkin_6 469 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1574 880 MobiDBLite consensus disorder prediction 154 168 - -
Clacu11g1574 880 MobiDBLite consensus disorder prediction 195 222 - -
Clacu11g1574 880 MobiDBLite consensus disorder prediction 407 436 - -
Clacu11g1574 880 Gene3D Phosphorylase Kinase; domain 1 454 551 - -
Clacu11g1574 880 MobiDBLite consensus disorder prediction 225 254 - -
Clacu11g1574 880 MobiDBLite consensus disorder prediction 84 458 - -
Clacu11g1574 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1574 880 Pfam Protein kinase domain 469 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1574 880 MobiDBLite consensus disorder prediction 318 332 - -
Clacu11g1574 880 MobiDBLite consensus disorder prediction 92 128 - -
Clacu11g1574 880 FunFam cyclin-dependent kinase G-2 isoform X1 454 551 - -
Clacu11g1574 880 CDD STKc_CDC2L1 463 760 IPR045267 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1574 880 MobiDBLite consensus disorder prediction 169 183 - -
Clacu11g1574 880 PANTHER CELL DIVISION PROTEIN KINASE 468 760 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0007346(PANTHER)
Clacu11g1574 880 MobiDBLite consensus disorder prediction 341 356 - -
Clacu11g1574 880 SUPERFAMILY Protein kinase-like (PK-like) 461 766 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1574 K08818 - - csv:101209096 1331.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1552 Clacu-Chr6:26432049 Clacu11g1574 Clacu-Chr11:26883467 2.80E-69 dispersed
Clacu08g1882 Clacu-Chr8:28070447 Clacu11g1574 Clacu-Chr11:26883467 1.90E-245 dispersed
Clacu11g0376 Clacu-Chr11:3441762 Clacu11g1574 Clacu-Chr11:26883467 8.90E-35 dispersed
Clacu11g0603 Clacu-Chr11:5811665 Clacu11g1574 Clacu-Chr11:26883467 1.00E-61 dispersed
Clacu11g1574 Clacu-Chr11:26883467 Clacu11g2083 Clacu-Chr11:31652544 5.30E-70 dispersed
Clacu11g1574 Clacu-Chr11:26883467 Clacu05g0668 Clacu-Chr5:5621629 7.50E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73980 PF00069 Pkinase 1.70E-75 CL0016 Clacu PK