Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1596 ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCCGGGATTAGGTCCGCATTGAATTACGGTAAAGGAAGAAGCCATGAGGGCATAATCAAGTATGGGTTCTGCCTGGTCAAAGGGAAAGCTAATCACCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATTTGTTTTCTAACATCTTGAAAGAGGAAGAGTTTTGGGTTGACCCCAACAGCTCCATCTCAAAAGCATATGAAAAGACGGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGTGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGAAGACTATGGGTGGCCAATGTCGGTGATTCACGTGCAGTTCTTTCTAGAGGGGGCGAAGCTGTACAGATGACCATCGATCATGAGCCAAATACAGAACGTCGCACCATTGAGAATAAAGGTGGCTTCGTTTCAAACATGCCAGGAGATGTGCCACGAGTAAACGGCCAGCTAGCAGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCAGATCCTGACATACGTGATGTTAATGTAGACGCCAACACGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGGTCATGGCCAATCAAGAAGCGGTCGATATTGCACGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGGAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTTTGTGTGCTATCGCATCTCTGGTTTCCCCTACTTGGAAAGCTGAAGAAGAAATAGCTTACCCCTCCCCACTTAACAAATTCGATCCAATTCCGAAGCTTTTTTCTGCCAATGCTTCCGCGATCCTCTGCCAGATGCCATATGCCTCTTCACCCCACATTTCAATGTGTATGTGCCAGATCTCATCTACTTTGGGGACTCGATCACGACCCAGCCAGAGTGGTCTGACTCGTTCCAAAGCCGAGTTTATCATGTGTGTAATGGCTGCCAACTCAGTGAGGAAGCTAAGCCTCATTGGATTGAGCTATGGTGGGTTTGTTGGATATTGCTTGGCGGCGAGATATTGCGAGATGGTGGAGAGGGTGGTGATGTGTAGTGCAGGTGTTTGTATGGAAAAGAAAGACCTGAAAGAAGGTTTGTTCAGAATCTCAGACTTGGAGGAGGCAGCCAAGATTTTGGTGCCGCAAGATCCTAAGAAATTGAAAGAATTGGTGAAGTTTGCCCTCTTCAGGCCTCCTCCACTAGCATTGCTGCCCTCTTGTAGTAAGTTGTGGGATGGAGTGTTCTTGAGAAAGGACTCTATCTATAAGCACTTTAGAAGTACTGAGTGTTTCTTTTTCTAA 1449 45.34 MDKLCCFNASYSGIRSALNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTERRTIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDVNVDANTDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALEKESKDDISCIVVLCAIASLVSPTWKAEEEIAYPSPLNKFDPIPKLFSANASAILCQMPYASSPHISMCMCQISSTLGTRSRPSQSGLTRSKAEFIMCVMAANSVRKLSLIGLSYGGFVGYCLAARYCEMVERVVMCSAGVCMEKKDLKEGLFRISDLEEAAKILVPQDPKKLKELVKFALFRPPPLALLPSCSKLWDGVFLRKDSIYKHFRSTECFFF 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27124233 27131400 + ClG42_11g0159600.10 Clacu11g1596 262473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1596 482 Gene3D alpha/beta hydrolase 337 469 IPR029058 -
Clacu11g1596 482 Gene3D - 26 281 IPR036457 -
Clacu11g1596 482 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Clacu11g1596 482 SMART PP2C_SIG_2 42 278 IPR001932 -
Clacu11g1596 482 FunFam Probable protein phosphatase 2C 39 21 279 - -
Clacu11g1596 482 SUPERFAMILY alpha/beta-Hydrolases 355 407 IPR029058 -
Clacu11g1596 482 SUPERFAMILY PP2C-like 25 277 IPR036457 -
Clacu11g1596 482 CDD PP2Cc 30 278 IPR001932 -
Clacu11g1596 482 SMART PP2C_4 23 276 IPR001932 -
Clacu11g1596 482 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Clacu11g1596 482 PANTHER PROTEIN PHOSPHATASE 30 276 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0239 Clacu-Chr7:2805238 Clacu11g1596 Clacu-Chr11:27124233 2.10E-87 dispersed
Clacu09g0481 Clacu-Chr9:4141035 Clacu11g1596 Clacu-Chr11:27124233 4.70E-34 dispersed
Clacu10g0936 Clacu-Chr10:19464231 Clacu11g1596 Clacu-Chr11:27124233 9.00E-120 dispersed
Clacu11g1596 Clacu-Chr11:27124233 Clacu11g1978 Clacu-Chr11:30743185 1.00E-86 dispersed
Clacu05g1756 Clacu-Chr5:26642957 Clacu11g1596 Clacu-Chr11:27124233 1.40E-52 transposed
Clacu06g1557 Clacu-Chr6:26475957 Clacu11g1596 Clacu-Chr11:27124233 1.50E-24 transposed
Clacu11g1011 Clacu-Chr11:12123125 Clacu11g1596 Clacu-Chr11:27124233 6.70E-30 transposed
Clacu01g1938 Clacu-Chr1:31452100 Clacu11g1596 Clacu-Chr11:27124233 3.00E-23 wgd
Clacu11g1596 Clacu-Chr11:27124233 Clacu08g1266 Clacu-Chr8:22630588 3.20E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1596 K17506 - csv:101213414 546.969