Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1597 ATGGCGAAAGAGAGAGAACTACTCGTTTACTCAGCTAGATTGGCAGAGCAAGCTGAGAGATACGAAGAGATGGTTGAGAAAATGGAGAAAGTTGCAAAGTTAAACGTGGAATTGACTGTGGAAGAGAGAAATCTGCTATCTGTTGGTTATAAGAATGTAATAGGAGCTAGACGAGCTTCCTGGCGTATTTTATCTTCAATTGAACAGAAGGAAACTACCAAACATAATGAGAAGAATGTGGAACGGATAATTGATTACAGGCATCGGGTTGAAGATGAGCTCTCTAAAATATGCAGTGACATATTGTCGATCATTGACCAACATCTCCTTCCATGTTCCTCAGCTGGAGAATCTACTGTATTCTACCATAAGATGAAAGGAGACTATTGTCGGTATTTGGCTGAGTTTAAATCTGGTGACGAGCGTAAACAAGTTGCAGATCAATCATTAAAGTCTTATGAGGCTGCATCTGCAATTGCTAACTCTGATTTGTCTCCAACTCATCCTATAAGACTTGGCTTGGCGCTGAACTTCTCTGTTTTCTACTATGAGATATTGAATTCCCCTGAAAGGGCCTGCCACCTTGCCAAGCAGGCCTTTGATGAGGCTATTGCAGAACTTGACAGTCTCAGTGAAGAATCCTACAAGGACAGTACCCTTATTATGCAACTCCTTAGGGACAACCTGACCCTGTGGACTTCTGATCTTCCAGACGAAGGTGGAGAGCAGTCCAATGCTGATGAACTTTAG 750 42.27 MAKERELLVYSARLAEQAERYEEMVEKMEKVAKLNVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKETTKHNEKNVERIIDYRHRVEDELSKICSDILSIIDQHLLPCSSAGESTVFYHKMKGDYCRYLAEFKSGDERKQVADQSLKSYEAASAIANSDLSPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPDEGGEQSNADEL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27133711 27136419 - ClG42_11g0159700.10 Clacu11g1597 262474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1597 249 FunFam 14-3-3 protein epsilon 1 246 - -
Clacu11g1597 249 Gene3D - 1 246 IPR036815 -
Clacu11g1597 249 ProSitePatterns 14-3-3 proteins signature 2. 215 234 IPR023409 -
Clacu11g1597 249 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
Clacu11g1597 249 PRINTS 14-3-3 protein zeta signature 117 139 IPR000308 -
Clacu11g1597 249 PRINTS 14-3-3 protein zeta signature 179 205 IPR000308 -
Clacu11g1597 249 PRINTS 14-3-3 protein zeta signature 152 178 IPR000308 -
Clacu11g1597 249 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Clacu11g1597 249 PRINTS 14-3-3 protein zeta signature 206 235 IPR000308 -
Clacu11g1597 249 PANTHER 14-3-3 PROTEIN 4 238 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Clacu11g1597 249 Coils Coil 11 34 - -
Clacu11g1597 249 SUPERFAMILY 14-3-3 protein 4 235 IPR036815 -
Clacu11g1597 249 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
Clacu11g1597 249 SMART 1433_4 5 246 IPR023410 -
Clacu11g1597 249 Pfam 14-3-3 protein 12 233 IPR023410 -
Clacu11g1597 249 PIRSF 14-3-3 1 246 IPR000308 -
Clacu11g1597 249 Coils Coil 193 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1197 Clacu-Chr8:21916373 Clacu11g1597 Clacu-Chr11:27133711 2.10E-102 dispersed
Clacu11g1597 Clacu-Chr11:27133711 Clacu11g1607 Clacu-Chr11:27240050 6.50E-90 dispersed
Clacu11g1597 Clacu-Chr11:27133711 Clacu08g1267 Clacu-Chr8:22633043 1.50E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1597 K06630 - csv:101213169 449.514