Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1599 ATGGCTTGGCGCCTTCTCGTCACCAACCTCAAGTCCACTCAAACCCAAACCCTAACCCTAACAAACATCCTTCGCCATTCCTCTCCTTACTTCTTCATCCCCAAACTCCCATTTTCCACCTCCTTCCTTGTCACCAAACTCCCCAAGAAGTTCAGGAAGAAACGCAAGAAGCACGAAAGTCCTAGAACCAAGCTCGTCCAATCCGAATCCAATCGCATTTCTCACTTCGAGCGCATCCTCCAAACCGATTCCTTCTTCAGATTCCTTTTTAAGTCCAAGGATTTCCTCTCCAAGCAGCCGGAGCACGTTCTTCGCCTCGACGATGCCGGCAAGCTCTATCGCGAACTCGGCTTCCCGAGAGGTCGCAAAGTCGCTCGATCCATTGAGCGTCATCCGCTTCTTTTCGAACCCTATCGTCACACCGATGGGAAAATGTGGTTCGGATTTACGGAGTTCATGGAGGGGTTGATTGAGGAAGAGAAGAGGATTATGGACTCCATGGAGCTGGATAGGGTTAGAACTGTGAGGAAGTTGCTGATGATGTCGGCGAATAAGCGAATTCCATTGACCAAAATCTACCACTGCAGGTCGGTGTTTGGGATTCCAGAGGATTTTAGAGATCGAGTGGGGAAATATCCGGATTACTTCCGAGTTGTGGTTGAAGATGATGGGAAGAGGGTGCTGGAATTGGTGAATTGGGACCCTCAATTGGCTGTTAGTCAGCTCGAGAAAGAGTTTGTGGTGAACGAGGATAAGGTGAAAAGGACATTCAAGTTTCCTGTGAAACATGGGAAGGATTTGGATTTGGATGAGGATGATACGAGGAAGTTGAATTTGTTGAATACACTTCCATTGGTTTCGCCATATTCAGATGGATCGAAGCTGGAACTTTGGACATTGGAAGCAGAGAAGTACAGGGTTGGCGTGGTGCATGAGTTCTTGAGCTTGACACTGGAGAAGAAGGCTTCTATTCATCATATTGTGGAGTTTAAGGAGGAATTTAGCTTAACTAAGCATACTTATCAGATGCTTCTGAAGCAACCCAGAACCTTCTATCTGGCCGGGACAGAAATGAATTGGGTTGTTTTCTTAAAGGACGCATACAATGAAAATGGCGACTTGATTGAGAAGGACCCTCAAGTGGTTTTCAACGAGAAGCTGCGTAGATATGCTCAAATGCAGAAAATGGAATGA 1194 46.57 MAWRLLVTNLKSTQTQTLTLTNILRHSSPYFFIPKLPFSTSFLVTKLPKKFRKKRKKHESPRTKLVQSESNRISHFERILQTDSFFRFLFKSKDFLSKQPEHVLRLDDAGKLYRELGFPRGRKVARSIERHPLLFEPYRHTDGKMWFGFTEFMEGLIEEEKRIMDSMELDRVRTVRKLLMMSANKRIPLTKIYHCRSVFGIPEDFRDRVGKYPDYFRVVVEDDGKRVLELVNWDPQLAVSQLEKEFVVNEDKVKRTFKFPVKHGKDLDLDEDDTRKLNLLNTLPLVSPYSDGSKLELWTLEAEKYRVGVVHEFLSLTLEKKASIHHIVEFKEEFSLTKHTYQMLLKQPRTFYLAGTEMNWVVFLKDAYNENGDLIEKDPQVVFNEKLRRYAQMQKME 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27157042 27158235 - ClG42_11g0159900.10 Clacu11g1599 262476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1599 397 Pfam Plant organelle RNA recognition domain 72 395 IPR021099 GO:0003723(InterPro)
Clacu11g1599 397 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 54 395 IPR045040 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1599 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0953 Clacu-Chr9:8917752 Clacu11g1599 Clacu-Chr11:27157042 2.40E-51 dispersed
Clacu10g1640 Clacu-Chr10:29798913 Clacu11g1599 Clacu-Chr11:27157042 1.10E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g416 . Blo12g00707 . . . Bpe04g00444 . . . . . Cma09g00559 . . . Cpe06g00425 . . . . . . . . . . . . . . . . . Cone17ag1214 Cone20ag0511 Lsi04g02237 Csa03g04448 Chy04g00252 . . . . Bda01g01362 Bpe02g01574 . Bma01g00900 . Sed13g2135 . Cmo09g00550 . . . Car09g00491 . . Bhi09g02439 Tan01g3791 Cmetu04g2115 . Hepe01g2130 . . Cla11g01384 Cam11g1442 Cec11g1468 Cco11g1464 Clacu11g1599 Cmu11g1418 Cre11g1838 . . . Cme04g00282
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013016 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 28