Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1624 ATGATTCCAATTATGGCAATAAGGAAGAAGAATCACGTTCTCACTTGCCAATTATTGTTACTTTTGTTGCCACTGCCGCCGCCGCCGGCCGCCGCGCAGGAAACCGGAGCCGGAACGATACCGATATCGTCGGAACCGGAGGTTAGTAAAAACATGGCGATTGCATTCGTTGCGCTGATTTCTGGCTTCTTCATCCTTGGCATCATCTCTATTTACACGCGCCGCTGCAGAGAGAGGAGGTTCCGAGGTGCAGGAATCGGAATAGGTAGCGGAGGTGGTGGCGGCGGCGTGCCGTGGAGGCCGTCGCGTGGACTCGATCCGGCGTTCATAGCGACATTTCCAACTTTTGTGTACTCGACGGTGAAAGGGCTGAAAATCGGGAAAAGCTCACTGGAATGTGCTGTTTGCTTGAATGAATTCGAAAATAGCGATAGCCTGCGTTTAATTCCGAATTGTAGCCATGTTTTTCACTCTGCTTGTGTTGATGCTTGGTTAGTTTCACACTCGACTTGCCCCGTTTGCAGAGCCAATCTTTGTCCTAAACCTGGTGAAGTAACATTGTCGATCGTTAATTTCGATCCGTCCACCGGCTCAGAAAGAATCGGAGTTGAACGGTCGCCGACGCCATCACCATCACCGCCAAACCACGTGTCGATTCCGATGGGGGATGACTGCCATGCCGGAGAAGGAGCGGCAACGGAGATAAATGCGATGAATCCAAGTCCGGTGGCGAACCGGAGTACACCGACGCGGTCGAGGTCACTGGGATGGCGGTTGAGCGGAATATTCCAGCGGTCTAACTCGACCGGGCATGAGCGGTTTACTCTAAGGTTACCGGAGGCAGTTCGGAGTCAGTTGATGAACTCGACGCTGAACCGGACCAGAAGCTGGGCGGAGTTGCCGAGAGTGCAGAGTTTGCGACGGGGATACCGGGGTGGAATCGGAGAAAATGGCGGGTGGAGGAATTTCCTACGGCGGACGTTTTCGGTTCCGGCGTCTGTAGTCGGAAGGGCTGCCGGAACCGATCCGGTGAATGAGGACTTCGGCGAACGATCGTTTGCGCGGCTGAGGCCAAGTGGAAATGGTCCGAGTACAACGGCGGATTAG 1107 54.29 MIPIMAIRKKNHVLTCQLLLLLLPLPPPPAAAQETGAGTIPISSEPEVSKNMAIAFVALISGFFILGIISIYTRRCRERRFRGAGIGIGSGGGGGGVPWRPSRGLDPAFIATFPTFVYSTVKGLKIGKSSLECAVCLNEFENSDSLRLIPNCSHVFHSACVDAWLVSHSTCPVCRANLCPKPGEVTLSIVNFDPSTGSERIGVERSPTPSPSPPNHVSIPMGDDCHAGEGAATEINAMNPSPVANRSTPTRSRSLGWRLSGIFQRSNSTGHERFTLRLPEAVRSQLMNSTLNRTRSWAELPRVQSLRRGYRGGIGENGGWRNFLRRTFSVPASVVGRAAGTDPVNEDFGERSFARLRPSGNGPSTTAD 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27386321 27387427 + ClG42_11g0162400.10 Clacu11g1624 262501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1624 368 Pfam Ring finger domain 132 175 IPR001841 -
Clacu11g1624 368 SUPERFAMILY RING/U-box 128 183 - -
Clacu11g1624 368 SMART ring_2 133 174 IPR001841 -
Clacu11g1624 368 CDD RING-H2_EL5-like 132 175 - -
Clacu11g1624 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 180 IPR013083 -
Clacu11g1624 368 FunFam E3 ubiquitin-protein ligase ATL6 98 181 - -
Clacu11g1624 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 44 223 - -
Clacu11g1624 368 MobiDBLite consensus disorder prediction 338 368 - -
Clacu11g1624 368 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1624 K10664 - - csv:101206673 546.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1292 Clacu-Chr8:22859272 Clacu11g1624 Clacu-Chr11:27386321 1.50E-74 dispersed
Clacu09g2028 Clacu-Chr9:35068030 Clacu11g1624 Clacu-Chr11:27386321 3.40E-13 dispersed
Clacu10g0044 Clacu-Chr10:847065 Clacu11g1624 Clacu-Chr11:27386321 1.40E-12 dispersed
Clacu11g1449 Clacu-Chr11:25529185 Clacu11g1624 Clacu-Chr11:27386321 3.20E-20 dispersed
Clacu02g1637 Clacu-Chr2:29789168 Clacu11g1624 Clacu-Chr11:27386321 3.60E-47 transposed
Clacu09g1186 Clacu-Chr9:11629044 Clacu11g1624 Clacu-Chr11:27386321 7.20E-23 transposed
Clacu10g0669 Clacu-Chr10:9378705 Clacu11g1624 Clacu-Chr11:27386321 7.80E-11 transposed
Clacu01g1922 Clacu-Chr1:31305399 Clacu11g1624 Clacu-Chr11:27386321 8.40E-24 wgd
Clacu11g1624 Clacu-Chr11:27386321 Clacu08g1290 Clacu-Chr8:22821073 1.00E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g460 . . Bda01g00896 Bda03g00477 . . . . Cmo05g00544 . . . . . Sed14g0990 Cpe06g00443 . Bhi04g00792 Tan02g2428 Cmetu05g0584 . Hepe10g0467 . Lcy13g1532 . . . . . . . . Cone7ag1259 Cone17ag1200 . Lsi04g02261 Csa03g04472 Chy04g00229 Cme03g01838 Blo17g00109 . . . Bpe02g01132 Bpe14g00468 . Bma02g00126 Sed06g1552 . Cmo09g00565 . Cma05g00516 Car05g00467 Car09g00510 Cpe11g00456 . Bhi09g02473 Tan01g3822 Cmetu04g1810 . Hepe01g2153 Mch11g0691 . Cla11g01406 Cam11g1463 Cec11g1491 Cco11g1487 Clacu11g1624 Cmu11g1441 Cre11g1860 Lsi08g00991 Csa02g02176 Chy03g01341 Cme04g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002449 3 2 1 1 2 1 3 2 2 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59