Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1631 ATGGCGTCCGCCATCCCTGAAAACCTAACAAGGGAGCAGTATGTTTACCTTTCGAAGCTTTCCGAGCAAGCCGAGCGCTACGAGGAAATGGTTCAGTTCATGCAGAAGCTTGTACTGAGCTCCACTCCAGCCTCGGAGCTCACTGTCGAGGAGCGCAATCTCCTTTCCGTCGCATACAAAAATGTGATCGGTTCTCTCCGCGCGGCTTGGCGTATCGTATCCTCAATTGAACAGAAGGAAGAAGGAAGGAAGAACGAAGATCACGTTGTCCTTGTCAAGGATTACAGATCCAAGGTCGAGTCCGAGCTCACCGACGTCTGCGCCAGTATTTTGAAGCTGTTGGACTCCAATCTGATACCATCCTCATCCTCTGGTGAATCTAAGGTGTTCTACTTAAAGATGAAGGGAGATTACCATAGGTACCTGGCGGAGTTTAAGATCGGGGAGGAGAGGAAGTCCGCCGCCGAGGATACCATGCTAGCTTACAAGGCTGCTCAGGATATTGCAGCTGCCGATCTTGCACCAACGCATCCAATCAGGCTGGGCCTAGCACTAAATTTCTCTGTTTTTTACTTTGAGATCCTGAACCAGCCTGACAAAGCCTGTAGCATGGCCAAACAGGCATTTGAAGAAGCCATTGCGGAATTGGACACATTAGGTGAAGAATCATACAAGGATAGCACTCTAATCATGCAGCTCTTAAGAGACAATCTCACCCTTTGGACTTCTGATACACAGATTATCGGTCGGAGTTTGATTCCTTCTAGGGTTTCTCTGAGTTCTCTCTCGTCTCATGGAGGACTTCGCTTTTCACGATGGCAACGTCTGCGGTTTGCTCGAGAGCAGGCACATCAACTTTCGTCAAGATCCTACCTATGGTTTGCAGATGCACTCGTCATTCATCCAAAGACTCTCCCAGGAAAAGGAACTGGAGTGGCCTGGAATTCTAGTGGTTCGCTTTTGATATCTGGATCAGATGACACCCGGATAAACATCTGGAGCTATTCTGGTCGAAAACTATTGCACTCTGTGGATACTGGGCATTCTGCAAACATATTTTGTACAAAATTTGTTCCTGAAACGTCTGATGAGCTTGTGGTCTCAGGAGCTGGGGATGCAGAGGTGCGCTTGTTTAATTTATCTCGCTTACGTGGGAGAGGACAAGATGATAATCCCATATCTTCATCGGCTTTGTATCAGTGTCACACCAGAAGAGTAAAAAAATTAGCTGTTGAAATAGGGAATCCAAATGTAGTATGGAGTGCTAGTGAGGATGGGACTCTTAGACAGCATGATTTTCGAGAGGGCATGTCTTGTCCTCCTGACGGAGCTTCTCACCAAGAATGCCACAATGTTCTTCTTGATTTGCGGTGTGGAGCTAGGAGGTCATTGGCTGATCCTCCCAGACAAACCCTTGCTTTGAAATCCTGTGACGTTAGTTCCACTAGGCCTCATTTACTTCTGGTTGGTGGAAGTGATGCATTTGCACGGTTATATGATAGAAGGATGCTGCCGCCCTTGTCTTCCAGCCAGAAGAGGATGTCACCACCTCCCTGTGTTAACTACTTCTGTCCAATGCATCTCTCTGATCGGGTCCGATCGGGTTTGCATTTGACTCATGTTACTTTTAGTCCGAATGGAGAAGAGATTCTGCTTAGCTATAGTGGAGAACATGCATACTTGATGAATGTAAATCATGCTGGCCTAAGTACAATGCAGTATACATCAGGAGATGTTTCTAAGTTAATGAGCTTCACTCCTGTACTCAACGGATTGGAATTGCAGCATCCGGTTTCCAATCTATCTAATGGTTTGCCTTTAAATTGTGGTGTTAATGCAAAGCTTGATAAATGCAGAAAATTATTACAAATAGCTGAAAAATGCTTGGACGGTGGGAACTACTTTGGTGGAATAGAGGCATGCAATGAAATTTTGGATGGATATGGTCGTAATATTGGTGTTATTTTCAAGCACGATACATTATGCACACGTGCTGCCTTATTACTCAAGCGGAAGTGGAAGAATGATGTTCATATGGCCATAAGAGATTGTTATAGTGCTAGGAAAATGGATCATTCCTCTTTCAGAGCACATTACTACATGTGCGAAGCTCTATCGCAGCTGGGTAGACATAAGGAAGCCCTAGATTTTGCATTTGCTGCTCAGTGTTTAGCCCCATCTAACCCTGAAGTGGCAGAGAAGGTGGAAAGTGTAAAGAGGGAACTCGCAGCAGCTGAACTGGAAAAATCAAATAAAGGCAATGATGGAGCTCTAAGATCAGCACCGTTAGGTGGTGTATTATCATTAAGTGACTTTCTTTACCGCTCAGATGCAAATAGTGATGTTTCACAAGATGGGCTGAGATCAGAAAGAGAAGATTCTGATTATGATGAGGAGGTGGAGCTGGACTTTGAAACCTTATCAGGTGATGAAGCCCATGATGTCGATTCCAACGTTCTACATGGAAGTTTAAATCTTAGAATACATAGACGAGTTGATCCAGCAAGAGAAAGGGTTGGCCCAAATGGCTCCTGTGGGTCTCCTTCATCATCACAAAATGATGCAACACTTTATCAGCCGGAACCCGTCATTGATATGAAGCAAAGATATGTAGGTCATTGTAACATCGGAACTGATATTAAACAAGCCAGTTTTCTCGGCCAAAGAGGTGAATACGTTGCCAGTGGTAGCGATGATGGTAGATGGTTTATTTGGGAAAAGGGAACTGGTAGACTGATTAAAATACTTGTTGGAGATGGAGCTGTTGTGAATTGTGTTCAAAGTCATCCATTTGATTGTGCCATCGCTACTAGCGGGATCGACAATACCATAAAGCTATGGACTCCAACTGATCCAGTCCCGTCACTCATAGCCGGTGGAGCGGTCGGACCGCAGGCAGCCGACGTGTTGGCTGTAATAGAGAATAATCAGCGCAGACTCTGCCGTAATAGAGAAGCCATACTGCCTTTTGAAATTTTAGAGCGAGTTGATATTATAGTTTTTGTTTATATGGATTCGCGAAGAAATTGGAATAGTCATAGTTGGCGAGTAGCAGTCAGCACACCGAACACATCGTTCAACAGACTCATACGAGTTGAGTCAGGTTATGGGAAGCCTCATTCAAGTTCTCGATATATAACATTTAACAGTCAAGCTACTATTTCTATGGGTGTTATTTAA 3180 44.65 MASAIPENLTREQYVYLSKLSEQAERYEEMVQFMQKLVLSSTPASELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEDHVVLVKDYRSKVESELTDVCASILKLLDSNLIPSSSSGESKVFYLKMKGDYHRYLAEFKIGEERKSAAEDTMLAYKAAQDIAAADLAPTHPIRLGLALNFSVFYFEILNQPDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDTQIIGRSLIPSRVSLSSLSSHGGLRFSRWQRLRFAREQAHQLSSRSYLWFADALVIHPKTLPGKGTGVAWNSSGSLLISGSDDTRINIWSYSGRKLLHSVDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLRGRGQDDNPISSSALYQCHTRRVKKLAVEIGNPNVVWSASEDGTLRQHDFREGMSCPPDGASHQECHNVLLDLRCGARRSLADPPRQTLALKSCDVSSTRPHLLLVGGSDAFARLYDRRMLPPLSSSQKRMSPPPCVNYFCPMHLSDRVRSGLHLTHVTFSPNGEEILLSYSGEHAYLMNVNHAGLSTMQYTSGDVSKLMSFTPVLNGLELQHPVSNLSNGLPLNCGVNAKLDKCRKLLQIAEKCLDGGNYFGGIEACNEILDGYGRNIGVIFKHDTLCTRAALLLKRKWKNDVHMAIRDCYSARKMDHSSFRAHYYMCEALSQLGRHKEALDFAFAAQCLAPSNPEVAEKVESVKRELAAAELEKSNKGNDGALRSAPLGGVLSLSDFLYRSDANSDVSQDGLRSEREDSDYDEEVELDFETLSGDEAHDVDSNVLHGSLNLRIHRRVDPARERVGPNGSCGSPSSSQNDATLYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKGTGRLIKILVGDGAVVNCVQSHPFDCAIATSGIDNTIKLWTPTDPVPSLIAGGAVGPQAADVLAVIENNQRRLCRNREAILPFEILERVDIIVFVYMDSRRNWNSHSWRVAVSTPNTSFNRLIRVESGYGKPHSSSRYITFNSQATISMGVI 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27454631 27474306 - ClG42_11g0163100.10 Clacu11g1631 262508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1631 1059 FunFam Transducin family protein / WD-40 repeat family protein 817 991 - -
Clacu11g1631 1059 SMART WD40_4 392 432 IPR001680 GO:0005515(InterPro)
Clacu11g1631 1059 SMART WD40_4 863 906 IPR001680 GO:0005515(InterPro)
Clacu11g1631 1059 SMART WD40_4 298 334 IPR001680 GO:0005515(InterPro)
Clacu11g1631 1059 SMART WD40_4 337 379 IPR001680 GO:0005515(InterPro)
Clacu11g1631 1059 SMART WD40_4 909 948 IPR001680 GO:0005515(InterPro)
Clacu11g1631 1059 SMART WD40_4 460 500 IPR001680 GO:0005515(InterPro)
Clacu11g1631 1059 SUPERFAMILY TPR-like 615 734 IPR011990 GO:0005515(InterPro)
Clacu11g1631 1059 MobiDBLite consensus disorder prediction 779 798 - -
Clacu11g1631 1059 Pfam 14-3-3 protein 18 242 IPR023410 -
Clacu11g1631 1059 Gene3D - 303 590 IPR015943 GO:0005515(InterPro)
Clacu11g1631 1059 Gene3D - 2 250 IPR036815 -
Clacu11g1631 1059 SMART 1433_4 11 255 IPR023410 -
Clacu11g1631 1059 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 312 996 IPR045151 GO:0005737(PANTHER)|GO:0045717(PANTHER)|GO:0080008(PANTHER)
Clacu11g1631 1059 Gene3D Tetratricopeptide repeat domain 610 758 IPR011990 GO:0005515(InterPro)
Clacu11g1631 1059 MobiDBLite consensus disorder prediction 831 856 - -
Clacu11g1631 1059 SUPERFAMILY WD40 repeat-like 309 947 IPR036322 GO:0005515(InterPro)
Clacu11g1631 1059 ProSiteProfiles Trp-Asp (WD) repeats profile. 916 947 IPR001680 GO:0005515(InterPro)
Clacu11g1631 1059 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Clacu11g1631 1059 Coils Coil 728 755 - -
Clacu11g1631 1059 ProSitePatterns 14-3-3 proteins signature 2. 224 243 IPR023409 -
Clacu11g1631 1059 SUPERFAMILY 14-3-3 protein 10 244 IPR036815 -
Clacu11g1631 1059 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 343 IPR001680 GO:0005515(InterPro)
Clacu11g1631 1059 Coils Coil 17 37 - -
Clacu11g1631 1059 Gene3D - 865 992 IPR015943 GO:0005515(InterPro)
Clacu11g1631 1059 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Clacu11g1631 1059 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
Clacu11g1631 1059 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Clacu11g1631 1059 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Clacu11g1631 1059 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
Clacu11g1631 1059 PRINTS 14-3-3 protein zeta signature 215 244 IPR000308 -
Clacu11g1631 1059 FunFam 14-3-3 protein epsilon 8 251 - -
Clacu11g1631 1059 Pfam WD domain, G-beta repeat 911 947 IPR001680 GO:0005515(InterPro)
Clacu11g1631 1059 Pfam WD domain, G-beta repeat 310 334 IPR001680 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2137 Clacu-Chr2:34546951 Clacu11g1631 Clacu-Chr11:27454631 1.70E-17 dispersed
Clacu08g1281 Clacu-Chr8:22750550 Clacu11g1631 Clacu-Chr11:27454631 7.80E-102 dispersed
Clacu11g1607 Clacu-Chr11:27240050 Clacu11g1631 Clacu-Chr11:27454631 2.90E-101 dispersed
Clacu11g1631 Clacu-Chr11:27454631 Clacu02g0411 Clacu-Chr2:3697456 1.20E-18 dispersed
Clacu11g1631 Clacu-Chr11:27454631 Clacu08g1338 Clacu-Chr8:23406850 1.60E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1631 K11807 - csv:101206836 1305.81