Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1635 ATGGCTTGTAAGTTCCTGTTTCCTCTCTTACTAGCTTCATTTCTTATACTTTTAACCCTTTTCACCTCTTCATTTGCTGCAAATGATTCTCTCACTAATTTTTTCCCTGCAAAATCCATTTGCAAATTCACCTCAAATCCTTCCTACTGCATCACTGTGCTTAAAAAATCCACAGGTGGTAATGTCTACGACTCTGGCCGGTTTTCGATCCGTCATTCTTTATCTAAAGCATCTAGATTCTTTGACTTGATTGAGAAGCATCTTCAAAACACTTCAACTCTACCAAAATCCATCACTGGAGCTCTTACAGATTGTCAGTATCTTGCTCAACTGAATATCAATTTCTTGTCGAATTCGTTTCGGGCCGTTAATGGCACGGATAAAAAGCTAACTTACTCAAAAGCTGATTATATCCAAAGTCTTCTTAGTGCCATTTTAACCAACATTGATACCTGTCTTGATGGTCTAAACACTGTAGCCTCAGGTTCAAGTTTGGAGAAAGACTTGTTAGCCCCACTTATTGATTGTACCAAATCATACAGTCTTTCACTTGATCTTTTTACAAAGGGTTGGGTTCCTAGGAGGAATAGAAACAGAACACTTGGGAAAAAACACCAGCAGTTTAGGAAAGGACCAGTACCGTTGAGAATAATGTCGAGACGCGACCGGGAAGTTTACAACTCGGTGGTGAATCGGAGAAAGCTTTCTTCTTCATCAGATGACGGAGTTTTGGTTAGTGGCATCGTAGTTGTGAGTCAAGATGGCAAAGGAGACTTCCTTAACATCACAGAAGCTATTAATGCAGCTCCAAATAAAGCTCTTGCTGCCAATGGCTACTTCTTGATTTACATTATGGCTGGTGTTTACCAAGAGTATGTGTCTATCCCTTCAAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAATCAGACTATCATCACAGGCAACCGGAGCGTCGCGGACGGATGGACGACGTTCAACAGTGCAACTTTTGCTGTAGCAGCAGAAGGATTCATGGCAGTAAACATAACCTTCCAAAACACAGCTGGACCCATCAAGGGCCAAGCAGTTGCATTAAGAAGTGGAGCTGATATGTGTGTTTTTTACAGCTGCAGTTTTGAAGGCTACCAAGACACCTTATACACTCATTCCCTCAGACAATTCTTTAGAGAATGTGATATTTATGGCACAGTAGACTTCATATTTGGAAATGCCGCTGTTGTCTTCCAAAACTGTAACATATATCCCCGTCTTCCCCACCCCGGTCAGACCAACATGATCACGGCTCAAGGCCGATCGGATCTGAACCAAAACACCGGGACTTCGATCCACAACTGCACGATCCGCTCCGCAAGCGATTTGGCTGCAAGTAGTAGCTATATGAACAAGACATATTTGGGAAGGCCATGGAAGAAATATTCAAGAACAATGTATATGCAAACATTTATAGATGAGTTTATAAATCCTGGTGGTTGGGATCCATGGTCAGGGGAATATTTGAGTACATTGTATTATGGAGAGTATAATAATAGAGGAGGTGGATCAAATACAAAGAACAGAGTTAATTGGTCAGGTTTTCATGTGATTAATAATGCAACAGATGCTGCTTATTTTACAGTTTCAATTTTCTTGGTTGGGGATGTGTGGTTGCCTCCAACATGTGTGCCTTACACCGGAGGCTTGATATAA 1692 41.25 MACKFLFPLLLASFLILLTLFTSSFAANDSLTNFFPAKSICKFTSNPSYCITVLKKSTGGNVYDSGRFSIRHSLSKASRFFDLIEKHLQNTSTLPKSITGALTDCQYLAQLNINFLSNSFRAVNGTDKKLTYSKADYIQSLLSAILTNIDTCLDGLNTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRRNRNRTLGKKHQQFRKGPVPLRIMSRRDREVYNSVVNRRKLSSSSDDGVLVSGIVVVSQDGKGDFLNITEAINAAPNKALAANGYFLIYIMAGVYQEYVSIPSKKKYLLMIGDGINQTIITGNRSVADGWTTFNSATFAVAAEGFMAVNITFQNTAGPIKGQAVALRSGADMCVFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPHPGQTNMITAQGRSDLNQNTGTSIHNCTIRSASDLAASSSYMNKTYLGRPWKKYSRTMYMQTFIDEFINPGGWDPWSGEYLSTLYYGEYNNRGGGSNTKNRVNWSGFHVINNATDAAYFTVSIFLVGDVWLPPTCVPYTGGLI 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27504948 27507601 - ClG42_11g0163500.10 Clacu11g1635 262512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1635 563 SMART PMEI_2 30 186 IPR006501 GO:0004857(InterPro)
Clacu11g1635 563 Pfam Plant invertase/pectin methylesterase inhibitor 38 185 IPR006501 GO:0004857(InterPro)
Clacu11g1635 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 189 IPR035513 -
Clacu11g1635 563 PANTHER PECTINESTERASE 14 553 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu11g1635 563 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Clacu11g1635 563 Gene3D - 245 562 IPR012334 -
Clacu11g1635 563 NCBIfam pectinesterase inhibitor domain 9 160 IPR006501 GO:0004857(InterPro)
Clacu11g1635 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 190 IPR035513 -
Clacu11g1635 563 FunFam Pectinesterase 244 562 - -
Clacu11g1635 563 Pfam Pectinesterase 249 548 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu11g1635 563 SUPERFAMILY Pectin lyase-like 245 561 IPR011050 -
Clacu11g1635 563 CDD PMEI-like_3 39 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0119 Clacu-Chr2:1276120 Clacu11g1635 Clacu-Chr11:27504948 7.30E-150 dispersed
Clacu09g2093 Clacu-Chr9:35723774 Clacu11g1635 Clacu-Chr11:27504948 7.70E-78 dispersed
Clacu10g0596 Clacu-Chr10:7775859 Clacu11g1635 Clacu-Chr11:27504948 2.30E-91 dispersed
Clacu11g0163 Clacu-Chr11:1305609 Clacu11g1635 Clacu-Chr11:27504948 1.60E-81 dispersed
Clacu11g1635 Clacu-Chr11:27504948 Clacu09g0554 Clacu-Chr9:4716330 1.60E-176 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1635 K01051 - csv:101205879 973.385