Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1638 ATGTTCCCAAAGCCCCACCACCAACCACCGCCCCATTCCCAGCCCTTTCCCCGTTCTTTTTCCGTCGCCGCCACTCCGCCGCCGCGTGATTCACCAGCCTCCGCCGATGAGGATTCCGCGGCCGGTCCCTCGCCTCTCGCTCACGCCATGGTTCTCAAAGAACCGACCTCCACCGGCGACGGAGCTTCCATCGAGGTTGTGCGCCGCCCCCGCGGCCGCCCGCCGGGATCCAAGAACAAGCCGAAGCCAGCGGCCGTCGTTGTCGCCGGCCGCGAGGCCGAGCCGGCGATGAGTCCTTATGTACTCGAAGTCCCCGGCGGCAGCGATGTCGTCGAATCGATTTCCCGATTTTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCTTACGGAACCGTCGCTGACGTCACTCTCCGGCAACCGTCGTCGTCTCCGGTCAGTACAGTCACTTTCCATGGACGATTCGATATTCTATCCGTCTGCGCAACTTTTGTTCCTCACACGACGTCGTTTCCAATTCCTAATGGATTCACCATCACGCTAGCCGGACCGCAGGGCCAGATCTTCGGCGGCTTGGTTGCCGGATCTTTAATCGGCGTCGGAACCGTCTATGTTATAGCCGCTTCATTCAACAATCCGTCGTATCAGCGGCTGCCATCGGAGGATGAGGTCAGAAAATTAACCTTCAGCGATGTTGAAGAAGCTCACTCTCCGATCTCCGGCGGCAAAGATAGCGAAAACACCGCCGCAGCCGCCGCCACAGAGACCTGCGGTTTGCTGCCGATGTACAGCACTCACTCCTCTTCCGACGTAATTTGGACTCCGGCCGCCAGACAACCGCCTCCACCGCACCATCGTCAGTACTAA 870 59.77 MFPKPHHQPPPHSQPFPRSFSVAATPPPRDSPASADEDSAAGPSPLAHAMVLKEPTSTGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAGREAEPAMSPYVLEVPGGSDVVESISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVSTVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGSLIGVGTVYVIAASFNNPSYQRLPSEDEVRKLTFSDVEEAHSPISGGKDSENTAAAAATETCGLLPMYSTHSSSDVIWTPAARQPPPPHHRQY 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27538526 27539395 - ClG42_11g0163800.10 Clacu11g1638 262515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1638 289 CDD DUF296 99 211 IPR005175 -
Clacu11g1638 289 MobiDBLite consensus disorder prediction 1 84 - -
Clacu11g1638 289 Gene3D - 98 237 - -
Clacu11g1638 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Clacu11g1638 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 54 247 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu11g1638 289 MobiDBLite consensus disorder prediction 1 16 - -
Clacu11g1638 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Clacu11g1638 289 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Clacu11g1638 289 FunFam AT-hook motif nuclear-localized protein 98 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu11g0821 Clacu-Chr11:8110685 Clacu11g1638 Clacu-Chr11:27538526 3.60E-32 dispersed
Clacu11g1638 Clacu-Chr11:27538526 Clacu08g1329 Clacu-Chr8:23297496 9.90E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1638 - - - 0.0