Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1640 ATGAACGAAAACAAGGTGTGTCTGTTCTTGCTAATCAGATTAGTGTCTCATTGGGTCAAGAATCTCAAAGCCCTCGTGGTGCTTGAAGGTGTGTCTGTTCTTGCTAATCAGATTAGTGTCTCATCTTCCCCTTTATCTGTAGAATCTAATTGCATTAGACTTAGCATAACTCTGCTTTGTTCTCGTCGTTTTGTCATTACGAATTTGAAATCCTTCGCAGACAGCGCCACCCCCTTCCCCTTTCCCCCAAATCTCTGCTGCTTCATTTCTCGATCTTCATCAGGTTTGTCAATGGAGAACTTGGATGGAAAATCTTCAGATTCTACGCAATGCGTTCGCGTTGCTGTTAATATCAGACCTTTGATTACACCCGAGCTAATGGTTGGATGCACGGATTGTATTACAGTTGTGCCTGGCGAACCTCAGGTTCAAATTGGCTCACATGTATTCACATACGACAATGTGTATGGTAGTGCTGGATCACCATCTTATGCATTATACGACGATTGCGTTGCTCCACTAGTCGATGCATTATTTCAGGGTTATAACGCTACTGTTCTTGCTTATGGACAGACGGGGTCTGGAAAGACTTACACAATGGGGACGAATTATAGTGGTGAAGGAAGTAATGATGGAGTAATACCCAAAGTAATGGAAAAAATATTCAAAAAGGTCGAGACAAAGAAGGATTCTACCGAATTCTTGATCAGAGTATCATTTATTGAGATATTTAAGGAAGAAGTCTTTGATTTGCTTGATGCAAGTACTTGCCTTAACACAAAGGGTGAAGGGACAAAGCCTTTTGCTCCTCCACGAGTTCCAATACAAATACGAGAAACGGTTAATGGTGGAATCACACTTGTTGGCGTCACCGAGGCCGAAGTTCGCACCACAGAAGAAATGACATCTTACTTGTCTCGTGGTTCATTAGCACGTGCAACTGGAAGTACCAACATGAATAGCCAGTCAAGTCGATCACATGCCATATTTACTATTACCATGGAGCAAAAGAAGAAGCTTGGGCGAGGCATGTCTCATGATGATACATGTGACGACATTCTATGTGCTAAGCTCCACTTGGTGGATCTTGCCGGTTCTGAAAGAGCCAAACGAACAGGTGCTGATGGCATGCGCTTTAAAGAAGGCGTTCATATCAACAAGGGCCTTTTGGCACTTGGCAATGTCATAAGTGCATTGGGAGATGAGAAGAAACGAAGAGAAGGATGTCATGTTCCCTACCGTGATAGCAAGTTAACACGTTTGCTACAGGATTCTCTTGGTGGCAACAGCAGAACAGTGATGATTGCTTGTGTTAGTCCTGCTGACTCAAATGCAGAGGAGACCTTAAACACGCTAAAATATGCTAATCGTGCTCGCAATATTCAAAATAAAGCAGTTATCAACCGAGATCCTGTAGGAGCTCAAATACAAAAAATGCGAAGTGAAATTGAGCAATTGCAAGCTGAGCTTTTATTCTATCGCGGTGATGCAACTTTACCATATGAGGAGCTGCAGATTCTAAAGCATAAAATATCATTACTTGAAGCAAGCAATGGAGAGTTGTTGCGGGAGCTTCAAGAACGTCGAGTCACTTGCGACCATTTGTCTCAGCGTGCTATTGATGCTCAGGTTGAAAAAGACAAACTTGCCATGATAATTGAATCCGTGCGGAATGGCAAATCTTTAGATGAGATTGAATCCAACTACGATAAGGATTGTGAATTGGTCAAGAGTTATGTTTCAAAAATTCAAGAGCTAGAAGGGGAGGTACTGAGATTGCAAAGCTTTAAGAGTTCAAAACACAGCCGATATGTAGATCTTGTGGAGTCTGATGATGATAGGCCGCAGTCTAGTAACATCTTATTTCCATGTTCAAATGAGCATTCGTTGGAATATGATCCCAAAGCTGTAGATATTTCAGATGGAATGGAAGATCATGAAAAGGAGCTTGAACATTCAACAATGCAAGAACGATTAGACAGGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTGCTGGTACGGATACCTCTGTTCTAAAACAACATTATGAAAAGAAGGTCCATGAATTGGAACAAGAAAAGAGAGCTTTACAGAAAGAGATCGAGGAACTTAGATGTAATCTTTCGAACATATCTTCTACATCTGATGATGGAGCGCAAAAGTTGAAGCAAGAATATCTGCAGAAACTAAATTTCCTAGAGACTCAGGTCTCGGAGTTGAAGAAGAAACAAGACGCTCAGGCTCAACTATTGAGACAGAAGCAAAAGAGTGATGAGGCAGCAAAAAGATTACAGGATGAGATCCACAGAATTAAGACCCAAAAGGTTCAACTTCAACACAAGATTAAACAGGAATCCGAGCAATTTAGATTATGGAAGGCTTCGAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGAGGGTAGGAGAAATGAATATGAGATGCACAAGCTCTTAGCTTTGAATCAAAGGCAGAAAATGGTCTTGCAACGAAAGACAGAAGAAGCCGCTCAGGCAACAAAAAGGCTTAAAGAGCTTTTAGAATCTCGAAAGGCAGCACGTGAATCTTCCGGTGGGGGATCAAATGGTCCTGGAATTCAGGCTCTAATGCAGAATATTGAGCACGAGCTTGAAGTTACAGTTAGGGTGCACGAGGTTCGTTCTGAATACGAACGTCAAATGGAAGAGAGGTCTAAAATGGCCAAGGAATTGGCTAAGCTTAAGGAGGAAGAAGATTTACACAGAGGAGCTAAGTTGAGTGATTGTACTCAAACAATGTCACCTGGTGCAAGAAATTCAAGAATTTTTGCCCTCGAAAACATGCTCGCTACATCATCCAGCTCTTTGGTTTCCATGGCTTCACATTTGTCAGAGGCAGAAGAGCGTGAGCGCGTTCTTGGTGGTAGGGGACGTTGGCATCAAGTGCGATCTTTAGCCGATGCAAAGAACATTATGAATTTTTTGATGAATTTAGCATCCTCTTCAAGGTGTTTGCTATGGGATAAAGAGTTTGCTTCTAGAGAGAAGGATTCAGAAATTAGAGAATTGAAACAAAAAATAGTGAATCTTAGTGGCATGCTGAAAAAATCAGAAGCGCAAAAGGCAGAACTTATTCATCAGAACTCGGTTTTGAAAAGATGTTCCCCGGTTAATAGCGGGGGGCATAACTACGATTTACGCAAGCAGGAGCATCGAAATTCTGTCGTCATACCTGCGGACATGGATACATCAGAATCAGATTATGCAGATCTTAGTTCAGATAGCGACGATATTAATTATGATTGGGAGAGATCCATGAAACGACGATTTGATAGGAAAAAAGTCTCTAAAGCTAAGGGTCGTTCAAGCATGGTTGTCTTAGATGGCAAAAATAGTACAGAGTTTAACTTGGATAGTTCTGGCGATGGGGTACTTCGTGGGAATGAATCCACTGCTAGCACCATTGTTTGTTGTACTTGTAGCAGATCTTCTTCCTGCAAGACAACAAAGTGCCAATGTAGAGCGAATGGTGGTGCTTGTGGCTTGTCATGTGGTTGCATACCATCAAAGTGTTCAAACAGAGGTAGTAAAAGTGACCGGGACGCATCATTGCAACTGGATTTAACCAGGAATGTTCGAAATGCTATGGAAAACGATGAAACCGATGAGGAGAGTCGTGACCTTGTTTCTCATGGTGCAAGGTTGCTTCAGAATGCATTGGCTGAGAGACCAAGTGACGATGCTCCTCCAGCTGAAGATGGTGGCGCAAAAAGAAAGCCTCTATCAGACATCGGAAACACATTGGTGAAATCAAAGACAAACAAGCCAAACCAGAGAAAGAAATGGCGAAAATCTACCATTCAACTGATTCCAACCCCACAAGCATCTTCCCAACCAGAAAAACCCGAAGCCACCCAGAAGACTGAGAATGATTTGAATGAGATTGTCAACGTCCCATTGAAACTTCCCCGAGCTATGCGATCCGCTGCTGCGAACGGCGGGAACCTACTGAGAGAAAGAAACTCCGATCAGCTGGAAGATTCGGTCAGCGGAAACAAAGAGCATGAACTTATTGTTCCAAAAAGAGTGGATGAGAAAGAGAACTGCAACCGTTAA 4119 42.39 MNENKVCLFLLIRLVSHWVKNLKALVVLEGVSVLANQISVSSSPLSVESNCIRLSITLLCSRRFVITNLKSFADSATPFPFPPNLCCFISRSSSGLSMENLDGKSSDSTQCVRVAVNIRPLITPELMVGCTDCITVVPGEPQVQIGSHVFTYDNVYGSAGSPSYALYDDCVAPLVDALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGSNDGVIPKVMEKIFKKVETKKDSTEFLIRVSFIEIFKEEVFDLLDASTCLNTKGEGTKPFAPPRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSYLSRGSLARATGSTNMNSQSSRSHAIFTITMEQKKKLGRGMSHDDTCDDILCAKLHLVDLAGSERAKRTGADGMRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSEIEQLQAELLFYRGDATLPYEELQILKHKISLLEASNGELLRELQERRVTCDHLSQRAIDAQVEKDKLAMIIESVRNGKSLDEIESNYDKDCELVKSYVSKIQELEGEVLRLQSFKSSKHSRYVDLVESDDDRPQSSNILFPCSNEHSLEYDPKAVDISDGMEDHEKELEHSTMQERLDRELKELDKKLEQKEAEMKRFAGTDTSVLKQHYEKKVHELEQEKRALQKEIEELRCNLSNISSTSDDGAQKLKQEYLQKLNFLETQVSELKKKQDAQAQLLRQKQKSDEAAKRLQDEIHRIKTQKVQLQHKIKQESEQFRLWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAQATKRLKELLESRKAARESSGGGSNGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMAKELAKLKEEEDLHRGAKLSDCTQTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERVLGGRGRWHQVRSLADAKNIMNFLMNLASSSRCLLWDKEFASREKDSEIRELKQKIVNLSGMLKKSEAQKAELIHQNSVLKRCSPVNSGGHNYDLRKQEHRNSVVIPADMDTSESDYADLSSDSDDINYDWERSMKRRFDRKKVSKAKGRSSMVVLDGKNSTEFNLDSSGDGVLRGNESTASTIVCCTCSRSSSCKTTKCQCRANGGACGLSCGCIPSKCSNRGSKSDRDASLQLDLTRNVRNAMENDETDEESRDLVSHGARLLQNALAERPSDDAPPAEDGGAKRKPLSDIGNTLVKSKTNKPNQRKKWRKSTIQLIPTPQASSQPEKPEATQKTENDLNEIVNVPLKLPRAMRSAAANGGNLLRERNSDQLEDSVSGNKEHELIVPKRVDEKENCNR 1372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27551546 27566548 + ClG42_11g0164000.10 Clacu11g1640 262517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1640 1372 Coils Coil 476 496 - -
Clacu11g1640 1372 Pfam Kinesin motor domain 144 461 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu11g1640 1372 Coils Coil 837 864 - -
Clacu11g1640 1372 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 106 1347 IPR027640 GO:0003777(InterPro)|GO:0003777(PANTHER)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER)
Clacu11g1640 1372 MobiDBLite consensus disorder prediction 1241 1313 - -
Clacu11g1640 1372 PRINTS Kinesin heavy chain signature 411 432 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu11g1640 1372 PRINTS Kinesin heavy chain signature 317 334 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu11g1640 1372 PRINTS Kinesin heavy chain signature 357 375 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu11g1640 1372 PRINTS Kinesin heavy chain signature 181 202 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu11g1640 1372 Coils Coil 689 723 - -
Clacu11g1640 1372 ProSiteProfiles Kinesin motor domain profile. 111 461 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu11g1640 1372 MobiDBLite consensus disorder prediction 1284 1313 - -
Clacu11g1640 1372 Coils Coil 732 797 - -
Clacu11g1640 1372 CDD KISc_KIF4 111 462 - -
Clacu11g1640 1372 Coils Coil 1021 1041 - -
Clacu11g1640 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 494 IPR027417 -
Clacu11g1640 1372 Coils Coil 652 683 - -
Clacu11g1640 1372 ProSitePatterns Kinesin motor domain signature. 356 367 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Clacu11g1640 1372 Coils Coil 891 918 - -
Clacu11g1640 1372 MobiDBLite consensus disorder prediction 1341 1372 - -
Clacu11g1640 1372 MobiDBLite consensus disorder prediction 1332 1372 - -
Clacu11g1640 1372 FunFam kinesin-like protein KIN-4A isoform X1 104 489 - -
Clacu11g1640 1372 Gene3D Kinesin motor domain 106 495 IPR036961 -
Clacu11g1640 1372 SMART kinesin_4 109 469 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu11g1640 1372 SMART CXC_2 1154 1198 IPR033467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1640 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1860 Clacu-Chr10:32256581 Clacu11g1640 Clacu-Chr11:27551546 9.50E-63 dispersed
Clacu10g2079 Clacu-Chr10:34162766 Clacu11g1640 Clacu-Chr11:27551546 1.30E-43 dispersed
Clacu11g0545 Clacu-Chr11:5130470 Clacu11g1640 Clacu-Chr11:27551546 1.60E-56 dispersed
Clacu05g2210 Clacu-Chr5:30672142 Clacu11g1640 Clacu-Chr11:27551546 9.60E-260 transposed
Clacu01g1908 Clacu-Chr1:31187827 Clacu11g1640 Clacu-Chr11:27551546 1.40E-29 wgd
Clacu11g1640 Clacu-Chr11:27551546 Clacu08g1322 Clacu-Chr8:23206860 6.00E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32