Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu11g1648 | ATGCCGCATAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACCTCCAAACACATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACCGAAAGCGACGCGAAACCGACCCCGAGGCCAGCGCGCGACTTTAGCGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCAAAGCAACAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACGCGATCGGCATCAGCTCACGTGAAAACTTGGCTTTCCAACTGCGACGAGGACCGCGAGCTTTTGCTTCCGCCACCTACCTCGGAGCCGGAGCATGATACATCGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCTAGAGTATCAAGCGAGAGTAGCTATGCGGGGAGTTTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGACGTCAAGGATTCATCGGCGTCAAAGATATTATCCTCGCACCCGGCGAAGCCGGAAGAGATTGAGGCTGTAGATGGTAAGGAAAGCATAGCACAGAGAGCGAAAGAGAGTTATTACCTGCAACTTGCTTTGGCTGCATCGCTTCGTTCCCATGCTAGTCTGGCTGGCGATCCTGTGCTCATGGAGGAATGCAGGATGGAAATTACGGACGCTGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGCCTGTCCTACTCCGACAAAATATCAGATGGTTTCTACAATATTCTGGGTATGAACCCGTATCTCTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGGCTACCTCCTCTGATGTCGCTTAGAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTGGATAGACATGGGGACTCTCGACTGAAAGAGCTTGAAGACAAGGCACAGGAACTATATTGTGCTTCAGAGAGCACCTTAGTGTTGGTGGAGAAACTAGGAAAGCTTGTTGCGATCTACATGGGGGGCACTTTTCCGGTGGAGCAAGGGGGGTTGCACCTACATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTCCAGAAATGCATTGTTCTTCCAATTGGTAGTCTTTCTATGGGACTATGCAGGCACCGTGCAATCCTTTTCAAGAAATTGGCAGATTACATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGACAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCGGGAAATATACATGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCGTCAATGCCTTCACCGCTCCACATTTCTCATTTAAAAGAGTTTCAAGAACCTTACGTGGAAAGTTATCTCAATCATCAAACTGTTGGGTCAAAGCAAATCTGTGGATTTCCTGAAAATCCTCTACGTTCAGGTTATGGAGAGTACCAGATGAAAGGGGGAAGCACTTTACATAGGAGTTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATGAGATCAACTCAGTTCTGTGTGGAGACAAAATTGAGCAAGGAGTGTGTGCTTCAGAGTCATATAATGCCACCCACTGGTGCTGATGCCGCCGAGGTGTTGAGTTCTGTTGGCACTGAATCTTTACGTGAAAACAAAGTTGTCATTGAAGAAATATACCAAGAAGAGGCGGTTGTGGCGGGGATTTCGCTGAATGAAACTAGCATTAATCCATCCAAATTAAGCTTGTCAACTCAAACTGCCTCAAAGGAGGTTGAGGGTAGGTCTCAAAATTGTTCAGCATCAACATATCCGAAATATCTGACGCTTGAACCTTCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAACTACATATAAAGGAGCGTGTCGGAGCTGGCTCCTTTGGTACAGTGCACCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACTGTGCAGGATTTCCATGATGATCAGTTGAAAGAGTTTCTAAGAGAGGTTGCAATAATGAAGCGGGTGCGCCATCCGAATGTGGTACTCTTTATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCCAGGGGTAGTCTATACCGCCTAATCCACAGGCCATCTTCTGGTGAATTGATGGATCAAAGGAAACGATTGCGCATGGCATTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAATCCCCTAACTTGTTGGTTGACAAAAATTGGACGGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTTGCTGGAACGCCTGAGTGGATGGCTCCGGAATTCCTTCGTGGAGAGCCCTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGGCTCGGCCCGGCTCAGGTCGTGGGAGCTGTCGCTTTCCAGAATAGAAAGCTTTCTATCCCACCAAGTACTTCTCCATTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCCTTCACAAGCATCGTCGAGTCCCTAAAGAAATTGCTGAAATCTCCACAGCAGTTGATAGCCATGGGTGGAACGCCTGTAATCTGTGTGAACCCACCGTATGTTTACTTGCCATCCCTAATGGAAGAATGCTCTCTTCTCTCAAGTGTACTTGTCCCTGCCAAGCAATTTTATGATTGGCAAATCAACAACCTGGATCTGCCTCCTTTCTTTGAAAACTGGAGCAAAGAATCTGCATCGATGACTTTAGCGGAAGAACTGATGAGGTCTTATGAACGTCAAGGATGTGAAATACTGTAA | 3000 | 46.5 | MPHRTTYFFPRQFPDRGFDSASTSKHILDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQSNKKLPAFYDWLVDKKATRSASAHVKTWLSNCDEDRELLLPPPTSEPEHDTSSVKDRSVDRNFDRQVSLPRVSSESSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHPAKPEEIEAVDGKESIAQRAKESYYLQLALAASLRSHASLAGDPVLMEECRMEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLRTIEPSETSMEVILVDRHGDSRLKELEDKAQELYCASESTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLHISHLKEFQEPYVESYLNHQTVGSKQICGFPENPLRSGYGEYQMKGGSTLHRSSGAETDKLVDQACMGMRSTQFCVETKLSKECVLQSHIMPPTGADAAEVLSSVGTESLRENKVVIEEIYQEEAVVAGISLNETSINPSKLSLSTQTASKEVEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRKLSIPPSTSPLLASLIESCWADDPVQRPSFTSIVESLKKLLKSPQQLIAMGGTPVICVNPPYVYLPSLMEECSLLSSVLVPAKQFYDWQINNLDLPPFFENWSKESASMTLAEELMRSYERQGCEIL | 999 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27621285 | 27630496 | - | ClG42_11g0164800.10 | Clacu11g1648 | 262525 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu11g1648 | 999 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 241 | 449 | - | - | |
Clacu11g1648 | 999 | SUPERFAMILY | Protein kinase-like (PK-like) | 629 | 908 | IPR011009 | - | |
Clacu11g1648 | 999 | MobiDBLite | consensus disorder prediction | 27 | 57 | - | - | |
Clacu11g1648 | 999 | Pfam | Protein tyrosine and serine/threonine kinase | 655 | 909 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1648 | 999 | ProSitePatterns | Protein kinases ATP-binding region signature. | 661 | 682 | IPR017441 | GO:0005524(InterPro) | |
Clacu11g1648 | 999 | CDD | STKc_MAP3K-like | 661 | 909 | - | - | |
Clacu11g1648 | 999 | ProSiteProfiles | Protein kinase domain profile. | 655 | 913 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1648 | 999 | SMART | serkin_6 | 655 | 913 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu11g1648 | 999 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 218 | 913 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Clacu11g1648 | 999 | Gene3D | Phosphorylase Kinase; domain 1 | 648 | 732 | - | - | |
Clacu11g1648 | 999 | MobiDBLite | consensus disorder prediction | 109 | 137 | - | - | |
Clacu11g1648 | 999 | PRINTS | Tyrosine kinase catalytic domain signature | 836 | 858 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1648 | 999 | PRINTS | Tyrosine kinase catalytic domain signature | 770 | 788 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1648 | 999 | PRINTS | Tyrosine kinase catalytic domain signature | 729 | 742 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1648 | 999 | PRINTS | Tyrosine kinase catalytic domain signature | 880 | 902 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1648 | 999 | FunFam | Serine/threonine-protein kinase CTR1 | 734 | 919 | - | - | |
Clacu11g1648 | 999 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 776 | 788 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu11g1648 | 999 | MobiDBLite | consensus disorder prediction | 109 | 145 | - | - | |
Clacu11g1648 | 999 | FunFam | Serine/threonine-protein kinase isoform 1 | 645 | 733 | - | - | |
Clacu11g1648 | 999 | Gene3D | Transferase(Phosphotransferase) domain 1 | 734 | 921 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g0420 | Clacu-Chr3:4611594 | Clacu11g1648 | Clacu-Chr11:27621285 | 6.20E-49 | dispersed | |
Clacu05g1942 | Clacu-Chr5:28609555 | Clacu11g1648 | Clacu-Chr11:27621285 | 2.30E-114 | dispersed | |
Clacu06g0436 | Clacu-Chr6:5164030 | Clacu11g1648 | Clacu-Chr11:27621285 | 3.60E-89 | dispersed | |
Clacu09g1433 | Clacu-Chr9:20259546 | Clacu11g1648 | Clacu-Chr11:27621285 | 5.30E-40 | dispersed | |
Clacu10g1916 | Clacu-Chr10:32788825 | Clacu11g1648 | Clacu-Chr11:27621285 | 8.20E-168 | dispersed | |
Clacu11g1310 | Clacu-Chr11:22301673 | Clacu11g1648 | Clacu-Chr11:27621285 | 4.90E-42 | dispersed | |
Clacu11g1440 | Clacu-Chr11:25386702 | Clacu11g1648 | Clacu-Chr11:27621285 | 8.40E-48 | dispersed | |
Clacu11g1648 | Clacu-Chr11:27621285 | Clacu08g1515 | Clacu-Chr8:25034093 | 3.10E-34 | dispersed | |
Clacu11g1648 | Clacu-Chr11:27621285 | Clacu04g1031 | Clacu-Chr4:24581566 | 3.80E-173 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73982 | PF07714 | PK_Tyr_Ser-Thr | 6.80E-64 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu11g1648 | - | - | - | 0.0 |