Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g1648 ATGCCGCATAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACCTCCAAACACATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACCGAAAGCGACGCGAAACCGACCCCGAGGCCAGCGCGCGACTTTAGCGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCAAAGCAACAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACGCGATCGGCATCAGCTCACGTGAAAACTTGGCTTTCCAACTGCGACGAGGACCGCGAGCTTTTGCTTCCGCCACCTACCTCGGAGCCGGAGCATGATACATCGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCTAGAGTATCAAGCGAGAGTAGCTATGCGGGGAGTTTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGACGTCAAGGATTCATCGGCGTCAAAGATATTATCCTCGCACCCGGCGAAGCCGGAAGAGATTGAGGCTGTAGATGGTAAGGAAAGCATAGCACAGAGAGCGAAAGAGAGTTATTACCTGCAACTTGCTTTGGCTGCATCGCTTCGTTCCCATGCTAGTCTGGCTGGCGATCCTGTGCTCATGGAGGAATGCAGGATGGAAATTACGGACGCTGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGCCTGTCCTACTCCGACAAAATATCAGATGGTTTCTACAATATTCTGGGTATGAACCCGTATCTCTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGGCTACCTCCTCTGATGTCGCTTAGAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTGGATAGACATGGGGACTCTCGACTGAAAGAGCTTGAAGACAAGGCACAGGAACTATATTGTGCTTCAGAGAGCACCTTAGTGTTGGTGGAGAAACTAGGAAAGCTTGTTGCGATCTACATGGGGGGCACTTTTCCGGTGGAGCAAGGGGGGTTGCACCTACATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTCCAGAAATGCATTGTTCTTCCAATTGGTAGTCTTTCTATGGGACTATGCAGGCACCGTGCAATCCTTTTCAAGAAATTGGCAGATTACATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGACAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCGGGAAATATACATGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCGTCAATGCCTTCACCGCTCCACATTTCTCATTTAAAAGAGTTTCAAGAACCTTACGTGGAAAGTTATCTCAATCATCAAACTGTTGGGTCAAAGCAAATCTGTGGATTTCCTGAAAATCCTCTACGTTCAGGTTATGGAGAGTACCAGATGAAAGGGGGAAGCACTTTACATAGGAGTTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATGAGATCAACTCAGTTCTGTGTGGAGACAAAATTGAGCAAGGAGTGTGTGCTTCAGAGTCATATAATGCCACCCACTGGTGCTGATGCCGCCGAGGTGTTGAGTTCTGTTGGCACTGAATCTTTACGTGAAAACAAAGTTGTCATTGAAGAAATATACCAAGAAGAGGCGGTTGTGGCGGGGATTTCGCTGAATGAAACTAGCATTAATCCATCCAAATTAAGCTTGTCAACTCAAACTGCCTCAAAGGAGGTTGAGGGTAGGTCTCAAAATTGTTCAGCATCAACATATCCGAAATATCTGACGCTTGAACCTTCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAACTACATATAAAGGAGCGTGTCGGAGCTGGCTCCTTTGGTACAGTGCACCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACTGTGCAGGATTTCCATGATGATCAGTTGAAAGAGTTTCTAAGAGAGGTTGCAATAATGAAGCGGGTGCGCCATCCGAATGTGGTACTCTTTATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCCAGGGGTAGTCTATACCGCCTAATCCACAGGCCATCTTCTGGTGAATTGATGGATCAAAGGAAACGATTGCGCATGGCATTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAATCCCCTAACTTGTTGGTTGACAAAAATTGGACGGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTTGCTGGAACGCCTGAGTGGATGGCTCCGGAATTCCTTCGTGGAGAGCCCTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGGCTCGGCCCGGCTCAGGTCGTGGGAGCTGTCGCTTTCCAGAATAGAAAGCTTTCTATCCCACCAAGTACTTCTCCATTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCCTTCACAAGCATCGTCGAGTCCCTAAAGAAATTGCTGAAATCTCCACAGCAGTTGATAGCCATGGGTGGAACGCCTGTAATCTGTGTGAACCCACCGTATGTTTACTTGCCATCCCTAATGGAAGAATGCTCTCTTCTCTCAAGTGTACTTGTCCCTGCCAAGCAATTTTATGATTGGCAAATCAACAACCTGGATCTGCCTCCTTTCTTTGAAAACTGGAGCAAAGAATCTGCATCGATGACTTTAGCGGAAGAACTGATGAGGTCTTATGAACGTCAAGGATGTGAAATACTGTAA 3000 46.5 MPHRTTYFFPRQFPDRGFDSASTSKHILDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQSNKKLPAFYDWLVDKKATRSASAHVKTWLSNCDEDRELLLPPPTSEPEHDTSSVKDRSVDRNFDRQVSLPRVSSESSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHPAKPEEIEAVDGKESIAQRAKESYYLQLALAASLRSHASLAGDPVLMEECRMEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLRTIEPSETSMEVILVDRHGDSRLKELEDKAQELYCASESTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLHISHLKEFQEPYVESYLNHQTVGSKQICGFPENPLRSGYGEYQMKGGSTLHRSSGAETDKLVDQACMGMRSTQFCVETKLSKECVLQSHIMPPTGADAAEVLSSVGTESLRENKVVIEEIYQEEAVVAGISLNETSINPSKLSLSTQTASKEVEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRKLSIPPSTSPLLASLIESCWADDPVQRPSFTSIVESLKKLLKSPQQLIAMGGTPVICVNPPYVYLPSLMEECSLLSSVLVPAKQFYDWQINNLDLPPFFENWSKESASMTLAEELMRSYERQGCEIL 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27621285 27630496 - ClG42_11g0164800.10 Clacu11g1648 262525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g1648 999 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Clacu11g1648 999 SUPERFAMILY Protein kinase-like (PK-like) 629 908 IPR011009 -
Clacu11g1648 999 MobiDBLite consensus disorder prediction 27 57 - -
Clacu11g1648 999 Pfam Protein tyrosine and serine/threonine kinase 655 909 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1648 999 ProSitePatterns Protein kinases ATP-binding region signature. 661 682 IPR017441 GO:0005524(InterPro)
Clacu11g1648 999 CDD STKc_MAP3K-like 661 909 - -
Clacu11g1648 999 ProSiteProfiles Protein kinase domain profile. 655 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1648 999 SMART serkin_6 655 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g1648 999 PANTHER SERINE-THREONINE PROTEIN KINASE 218 913 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu11g1648 999 Gene3D Phosphorylase Kinase; domain 1 648 732 - -
Clacu11g1648 999 MobiDBLite consensus disorder prediction 109 137 - -
Clacu11g1648 999 PRINTS Tyrosine kinase catalytic domain signature 836 858 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1648 999 PRINTS Tyrosine kinase catalytic domain signature 770 788 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1648 999 PRINTS Tyrosine kinase catalytic domain signature 729 742 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1648 999 PRINTS Tyrosine kinase catalytic domain signature 880 902 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1648 999 FunFam Serine/threonine-protein kinase CTR1 734 919 - -
Clacu11g1648 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g1648 999 MobiDBLite consensus disorder prediction 109 145 - -
Clacu11g1648 999 FunFam Serine/threonine-protein kinase isoform 1 645 733 - -
Clacu11g1648 999 Gene3D Transferase(Phosphotransferase) domain 1 734 921 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0420 Clacu-Chr3:4611594 Clacu11g1648 Clacu-Chr11:27621285 6.20E-49 dispersed
Clacu05g1942 Clacu-Chr5:28609555 Clacu11g1648 Clacu-Chr11:27621285 2.30E-114 dispersed
Clacu06g0436 Clacu-Chr6:5164030 Clacu11g1648 Clacu-Chr11:27621285 3.60E-89 dispersed
Clacu09g1433 Clacu-Chr9:20259546 Clacu11g1648 Clacu-Chr11:27621285 5.30E-40 dispersed
Clacu10g1916 Clacu-Chr10:32788825 Clacu11g1648 Clacu-Chr11:27621285 8.20E-168 dispersed
Clacu11g1310 Clacu-Chr11:22301673 Clacu11g1648 Clacu-Chr11:27621285 4.90E-42 dispersed
Clacu11g1440 Clacu-Chr11:25386702 Clacu11g1648 Clacu-Chr11:27621285 8.40E-48 dispersed
Clacu11g1648 Clacu-Chr11:27621285 Clacu08g1515 Clacu-Chr8:25034093 3.10E-34 dispersed
Clacu11g1648 Clacu-Chr11:27621285 Clacu04g1031 Clacu-Chr4:24581566 3.80E-173 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73982 PF07714 PK_Tyr_Ser-Thr 6.80E-64 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g1648 - - - 0.0